Dataset Information


Hierarchy within the mammary STAT5-driven Wap super-enhancer

ABSTRACT: Super-enhancers comprise of dense transcription factor platforms highly enriched for active chromatin marks. A paucity of functional data led us to investigate their role in the mammary gland, an organ characterized by exceptional gene regulatory dynamics during pregnancy. ChIP-Seq for the master regulator STAT5, the glucocorticoid receptor, H3K27ac and MED1, identified 440 mammary-specific super-enhancers, half of which were associated with genes activated during pregnancy. We interrogated the Wap super-enhancer, generating mice carrying mutations in STAT5 binding sites within its three constituent enhancers. Individually, only the most distal site displayed significant enhancer activity. However, combinatorial mutations showed that the 1,000-fold gene induction relied on all enhancers. Disabling the binding sites of STAT5, NFIB and ELF5 in the proximal enhancer incapacitated the entire super-enhancer, suggesting an enhancer hierarchy. The identification of mammary-specific super-enhancers and the mechanistic exploration of the Wap locus provide insight into the complexity of cell-specific and hormone-regulated genes. ChIP-Seq for STAT5A, GR, H3K27ac, MED1, NFIB, ELF5, RNA Pol II, and H3K4me3 in wild type (WT) mammary tissues at day one of lactation (L1), and ChIP-Seq for STAT5A, GR, H3K27ac, MED1, NFIB, ELF5, and H3K4me3 in WT mammary tissues at day 13 of pregnancy (p13). ChIP-Seq for STAT5A, GR, H3K27a in Wap-delE1a, -delE1b, -delE1c, -delE2 and -delE3 mutant mammary tissues at L1, and ChIP-Seq for NFIB and ELF5 in Wap-delE1b and -delE1c mutant mammary tissues at L1. ChIP-Seq for H3K4me3 in mammary-epthelial cells at p13 and L1. DNase-seq in WT mammary tissues at L1 and DNase-seq in Wap-delE1a, -delE1c, and -delE3 mutant mammary tissues at L1.

ORGANISM(S): Mus Musculus

TISSUE(S): Mammary Epithelial Cell, Mammary Gland

SUBMITTER: Kyung Hyun Yoo   Lothar Hennighausen  Xianke Zeng  Michaela Willi  Ha Youn Shin  Gil Metser  Chaochen Wang 

PROVIDER: E-GEOD-74826 | ArrayExpress | 2016-05-31



Dataset's files

Action DRS
E-GEOD-74826.idf.txt Idf Processed Processed Processed Processed
Items per page:
1 - 5 of 34

Similar Datasets

| E-GEOD-74826 | BioStudies
| S-EPMC4963296 | BioStudies
| S-EPMC6237736 | BioStudies
| S-EPMC7210877 | BioStudies
2016-01-01 | S-EPMC4756855 | BioStudies
| S-EPMC8047016 | BioStudies
| S-EPMC5520053 | BioStudies
| E-GEOD-72724 | BioStudies
2020-03-24 | GSE145193 | GEO
| S-EPMC5137441 | BioStudies