Transcriptomics

Dataset Information

295

Time course RNA-seq data from barley infested with Tetranychus urticae and Banks grass mite


ABSTRACT: Spider mites, including the two-spotted spider mite (Tetranychus urticae, TSSM) and the Banks grass mite (Oligonychus pratensis, BGM), are becoming increasingly important agricultural pests. The TSSM is an extreme generalist documented to feed on more than 1100 plant hosts. In contrast, the BGM is a grass specialist, with hosts including important cereal crops like maize, wheat, sorghum and barley. Historically, studies of plant-herbivore interactions have focused largely on insects. However, far less is known about plant responses to spider mite herbivores, especially in grasses, and whether responses differ between generalists and specialists. To identify plant defense pathways responding to spider mites, we collected time course RNA-seq data from barley (Hordeum vulgare L.) infested with TSSMs and BGMs. Additionally, and as a comparison to the physical damage caused by spider mite feeding, a wounding treatment was also included. The experiment was performed with four biological replicates across each of the following (28 samples in total): no infestation (C, control), 2hr after wounding (W2), 24hr after wounding (W24), 2hr after TSSM infestation (T2), 24hr after TSSM infestation (T24), 2hr after BGM infestation (B2), and 24hr after BGM infestation (B24).

ORGANISM(S): Hordeum vulgare  

SUBMITTER: Richard M Clark   Ricardo A Ramirez  Alice Ruckert  Robert Greenhalgh  Huyen Bui 

PROVIDER: E-GEOD-83676 | ArrayExpress | 2016-06-24

SECONDARY ACCESSION(S): SRP077020GSE83676PRJNA326683

REPOSITORIES: GEO, ArrayExpress, ENA

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