Transcriptomics,Multiomics

Dataset Information

18

Defined hypoxic model timecourse of H37Rv and H37Rv:deltadosR


ABSTRACT: Background: A significant body of evidence accumulated over the last century suggests a link between hypoxic microenvironments within the infected host and the latent phase of tuberculosis. Studies to test this correlation have identified the M. tuberculosis initial hypoxic response, controlled by the two-component response regulator DosR. The initial hypoxic response is completely blocked in a dosR deletion mutant. Methodology/Principal Findings: We show here that a dosR deletion mutant enters bacteriostasis in response to in vitro hypoxia with only a relatively mild decrease in viability. In the murine infection model, the phenotype of the mutant was indistinguishable from that of the parent strain. These results suggested that additional genes may be essential for entry into and maintenance of bacteriostasis. Detailed microarray analysis of oxygen starved cultures revealed that DosR regulon induction is transient, with induction of nearly half the genes returning to baseline within 24 hours. In addition, a larger, sustained wave of gene expression follows the DosR-mediated initial hypoxic response. This Enduring Hypoxic Response (EHR) consists of 230 genes significantly induced at four and seven days of hypoxia but not at initial time points. These genes include a surprising number of transcriptional regulators that could control the program of bacteriostasis. We found that the EHR is independent of the DosR-mediated initial hypoxic response, as EHR expression is virtually unaltered in the dosR mutant. Conclusions/Significance: Our results suggest a reassessment of the role of DosR and the initial hypoxic response in MTB physiology. Instead of a primary role in survival of hypoxia induced bacteriostasis, DosR may regulate a response that is largely optional in vitro and in mouse infections. Analysis of the EHR should help elucidate the key regulatory factors and enzymatic machinery exploited by M. tuberculosis for long-term bacteriostasis in the face of oxygen deprivation. Keywords: time-course Each hypoxic timecourse compared to the matching log phase sample. Each time point/strain represented by a minimum of three replicates.

OTHER RELATED OMICS DATASETS IN: PRJNA103007

ORGANISM(S): Mycobacterium Tuberculosis

SUBMITTER: Tige Rustad   Tige R Rustad  David R Sherman 

PROVIDER: E-GEOD-9331 | ArrayExpress | 2008-02-20

SECONDARY ACCESSION(S): GSE9331PRJNA103007

REPOSITORIES: GEO, ArrayExpress

Dataset's files

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E-GEOD-9331.README.txt Txt
E-GEOD-9331.idf.txt Idf
E-GEOD-9331.processed.1.zip Processed
E-GEOD-9331.raw.1.zip Raw
E-GEOD-9331.sdrf.txt Txt
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Publications

The enduring hypoxic response of Mycobacterium tuberculosis.

Rustad Tige R TR   Harrell Maria I MI   Liao Reiling R   Sherman David R DR  

PloS one 20080130 1


<h4>Background</h4>A significant body of evidence accumulated over the last century suggests a link between hypoxic microenvironments within the infected host and the latent phase of tuberculosis. Studies to test this correlation have identified the M. tuberculosis initial hypoxic response, controlled by the two-component response regulator DosR. The initial hypoxic response is completely blocked in a dosR deletion mutant.<h4>Methodology/principal findings</h4>We show here that a dosR deletion m  ...[more]

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