Transcriptomics

Dataset Information

45

Transcription profiling of Arabidopsis plants grown under diurnal conditions and transferred to cold conditions at different times of day to identify factors influencing cold-responsive genes


ABSTRACT: Arabidopsis plants growing under diurnal conditions were transferred to cold of approximately one day duration, starting at different times of the day. All comparisons are of unreplicated pairs and are thus not designed to identify cold-responsive gens in isolation but are rather to supplement existing publicly available data. The overall aim was to use a diverse set of experiments to see which factors have the greatest influence on the identity of cold-responsive genes.

OTHER RELATED OMICS DATASETS IN: E-MEXP-1345

INSTRUMENT(S): 418 [Affymetrix]

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Matt A Hannah  

PROVIDER: E-MEXP-1344 | ArrayExpress | 2008-04-10

REPOSITORIES: ArrayExpress

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Publications

Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome.

Bieniawska Zuzanna Z   Espinoza Carmen C   Schlereth Armin A   Sulpice Ronan R   Hincha Dirk K DK   Hannah Matthew A MA  

Plant physiology 20080328 1


In plants, low temperature causes massive transcriptional changes, many of which are presumed to be involved in the process of cold acclimation. Given the diversity of developmental and environmental factors between experiments, it is surprising that their influence on the identification of cold-responsive genes is largely unknown. A systematic investigation of genes responding to 1 d of cold treatment revealed that diurnal- and circadian-regulated genes are responsible for the majority of the s  ...[more]

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