Transcriptomics

Dataset Information

0

Transcription profiling of bone biopsies from postmenopausal females identifies 8 genes highly associated with bone mineral density


ABSTRACT: Postmenopausal females (50 85 years) representing a wide range of Bone mineral densities (BMDs) were consecutively registered, excluding persons who had diseases and medications known to affect bone remodeling. Low energy fracture(s) occurred in 32 (38 %). Trans-iliacal bone biopsies (84) were submitted to Affymetrix microarray expression analysis to study the relationship between BMD or osteoporosis and gene expression.

INSTRUMENT(S): 418 [Affymetrix]

ORGANISM(S): Homo sapiens  

SUBMITTER: Sjur Reppe  

PROVIDER: E-MEXP-1618 | ArrayExpress | 2009-11-12

REPOSITORIES: ArrayExpress

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Publications

Tilting the lasso by knowledge-based post-processing.

Tharmaratnam Kukatharmini K   Sperrin Matthew M   Jaki Thomas T   Reppe Sjur S   Frigessi Arnoldo A  

BMC bioinformatics 20160902 1


It is useful to incorporate biological knowledge on the role of genetic determinants in predicting an outcome. It is, however, not always feasible to fully elicit this information when the number of determinants is large. We present an approach to overcome this difficulty. First, using half of the available data, a shortlist of potentially interesting determinants are generated. Second, binary indications of biological importance are elicited for this much smaller number of determinants. Third,  ...[more]

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