Transcriptomics

Dataset Information

2

Comparative genomic hybridization of human breast carcinomas


ABSTRACT: Roswell Park Human 19K Array CGH

the format of the data is:

Reporter Identifier
Band
Count - number of replicate spots the data represents (some spots are excluded in image analysis, usually because they are too dim to be reliable)
chr - Chromosome
Start - Start location in base pairs
Stop - Stop Location in Base pairs
Center - Center in base pairs
g_loc - graphing location this is the location of the center in base pairs if the chromosomes were laid end to end
Log2 ratio - log2 ratio (test/control)
Ratio - linear version of the ratio above
A - Measure of brightness A=(log2 cy3 + log2 cy5)/2
Flag - Used to color code spots
3 - red probably mismapped
4 - green potentially polymorphic
5 - light blue Shows a high degree of duplication with other area in the genome (see UCSC genome browser)
reference - Reference for why the clone was flagged
Pub Med link - Pub Med ID for why clone was flagged

ORGANISM(S): Homo sapiens  

DISEASE(S): Breast Cancinoma (invasive Ductal And Invasive Lobular),Breast Carcinoma,Breast Carcinoma (invasive Lobular),Breast Carcinoma (invasive Ductal,Breast Carcinoma (invasive Ductal),Normal

SUBMITTER: Matthew A Maurer  

PROVIDER: E-MEXP-2141 | ArrayExpress | 2009-06-01

REPOSITORIES: ArrayExpress

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