Transcriptomics

Dataset Information

3

ScRNA-seq of pluripotent stem cell derived human intestinal organoids


ABSTRACT: Here, we used single cell RNA-sequencing (scRNA-seq) to profile pluripotent stem cell derived human intestinal organoids (HIOs) grown in matrigel or a non-adhesive alginate hydrogel after 28 days of in vitro growth. Additionally, we used scRNA-seq to profile HIOs derived in the presence of Neuregulin 1 (NRG1) and/or EGF after 40 days of in vitro growth.

INSTRUMENT(S): Illumina NovaSeq 6000

ORGANISM(S): Homo Sapiens

DISEASE(S): Normal

SUBMITTER: Qianhui Yu   Jason R Spence   Emily M Holloway   Joshua H Wu  

PROVIDER: E-MTAB-10268 | ArrayExpress | 2021-05-21

SECONDARY ACCESSION(S): ERP127857

REPOSITORIES: ArrayExpress, ENA

Dataset's files

Source:
Action DRS
Day-28_HIO_EGF_algenate_S33_L001_I1_001.fastq.gz Fastqsanger.gz
Day-28_HIO_EGF_algenate_S33_L001_R1_001.fastq.gz Fastqsanger.gz
Day-28_HIO_EGF_algenate_S33_L001_R2_001.fastq.gz Fastqsanger.gz
Day-28_HIO_EGF_algenate_S33_L002_I1_001.fastq.gz Fastqsanger.gz
Day-28_HIO_EGF_algenate_S33_L002_R1_001.fastq.gz Fastqsanger.gz
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