Transcriptomics

Dataset Information

239

Transcription profiling by array of human pre-treatment samples of pathologically confirmed solitary fibrous tumor


ABSTRACT: Sixteen pre-treatment samples of pathologically confirmed solitary fibrous tumors (SFT) were available for RNA profiling. They were collected from 16 patients who underwent initial surgery and/or diagnostic biopsy. Samples were macrodissected by pathologists, and frozen within 30 min of removal in liquid nitrogen in our biobank (Biobank authorization number 2008/70, APHM). All profiled specimens contained more than 70% tumor cells. Each patient gave written informed consent for molecular analysis, and the study was approved by our institutional ethics committee. Total RNA was extracted from frozen samples by using the All-In-One Norgen Biotek kit (Thorold, Canada) and integrity was controlled by Agilent analysis (Bioanalyzer, Palo Alto, CA). Gene expression profiling was done with Affymetrix U133 Plus 2.0 human oligonucleotide microarrays with labeling kit and protocol from manufacturer.

ORGANISM(S): Homo sapiens  

SUBMITTER: Pascal FINETTI  

PROVIDER: E-MTAB-1361 | ArrayExpress | 2013-11-12

REPOSITORIES: ArrayExpress

altmetric image

Publications


<h4>Background</h4>Solitary fibrous tumors (SFTs) are rare spindle-cell tumors. Their cell-of-origin and molecular basis are poorly known. They raise several clinical problems. Differential diagnosis may be difficult, prognosis is poorly apprehended by histoclinical features, and no effective therapy exists for advanced stages.<h4>Methods</h4>We profiled 16 SFT samples using whole-genome DNA microarrays and analyzed their expression profiles with publicly available profiles of 36 additional SFTs  ...[more]

Similar Datasets

2007-01-01 | S-EPMC2039708 | BioStudies
2019-01-01 | S-EPMC6597415 | BioStudies
2020-01-01 | S-EPMC6796658 | BioStudies
2020-01-01 | S-EPMC7005559 | BioStudies
2020-01-01 | S-EPMC7061107 | BioStudies
2014-01-01 | S-EPMC4242816 | BioStudies
2019-01-01 | S-EPMC6746689 | BioStudies
2017-01-01 | S-EPMC5499212 | BioStudies
2013-01-01 | S-EPMC3654808 | BioStudies
2020-01-01 | S-EPMC7318349 | BioStudies