Transcriptomics

Dataset Information

296

RNA-seq of coding RNA of moss Funaria hygrometrica samples from three haploid (gametophyte) stages and three diploid (sporophyte) stages


ABSTRACT: We experimentally generated a genome-wide gene expression data. To this end, we first collected samples of three important haploid developmental stages, specifically germinating spores (gametophyte_1), protonemata (gametophyte_2) and young gametophores (gametophyte_3) (four biological replicates each). We also collected three developmental stages of the diploid phase (sporophyte), specifically sporophytes shorter than 5mm (sporophyte_1), elongated needle-like sporophytes (sporophyte_2), and sporophytes with swollen capsules (sporophyte_3)

INSTRUMENT(S): Illumina Genome Analyzer II

ORGANISM(S): Funaria hygrometrica  

SUBMITTER: Peter Szovenyi  

PROVIDER: E-MTAB-1664 | ArrayExpress | 2013-07-17

SECONDARY ACCESSION(S): ERP002608

REPOSITORIES: ArrayExpress, ENA

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Publications

Efficient purging of deleterious mutations in plants with haploid selfing.

Szövényi Péter P   Devos Nicolas N   Weston David J DJ   Yang Xiaohan X   Hock Zsófia Z   Shaw Jonathan A JA   Shimizu Kentaro K KK   McDaniel Stuart F SF   Wagner Andreas A  

Genome biology and evolution 20140514 5


In diploid organisms, selfing reduces the efficiency of selection in removing deleterious mutations from a population. This need not be the case for all organisms. Some plants, for example, undergo an extreme form of selfing known as intragametophytic selfing, which immediately exposes all recessive deleterious mutations in a parental genome to selective purging. Here, we ask how effectively deleterious mutations are removed from such plants. Specifically, we study the extent to which deleteriou  ...[more]

Publication: 1/2

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