Transcriptomics

Dataset Information

3

Recurrent TCF12 mutations in anaplastic oligodendroglioma (Part III, genotyping by array)


ABSTRACT: A Cartes d'Identite des Tumeurs (CIT) project from the french Ligue Nationale Contre le Cancer (http://cit.ligue-cancer.net); Anaplastic oligodendrogliomas (AOs) are rare primary brain tumors which are generally incurable with few treatment targets identified. Most oligodendrogliomas have chromosome 1p/19q co-deletion and IDH mutation. We analyzed 51 AOs by whole-exome and/or transcriptome sequencing identifying previously reported frequent somatic mutations in CIC and FUBP1 genes. We also identified recurrent mutations in TCF12 (11% of IDHmut-codel) which encodes basic helix-loop-helix (bHLFH) transcription factor 12 A Cartes d'Identite des Tumeurs (CIT) project from the french Ligue Nationale Contre le Cancer (http://cit.ligue-cancer.net); which is an oligodendrocyte-related transcription factor in IDHmut-codel tumors. Strikingly, the somatic mutations (encoding E548R and R602M substitutions) have not been reported previously in cancer but are identical to germline mutations causing craniosynostosis. Incorporating TCGA data on 43 AO tumors also implicates functional mutation of SMARCA4, NOTCH1, NOTCH2, SETD2, RBPJ and ARID1A/1B. These data are compatible with the combined deregulation of metabolism, chromatin organization/remodeling and Notch-pathway genes in AO oncogenesis. Our analysis provides further insights into the unique and shared pathways driving AO and new targets for therapeutic intervention.

ORGANISM(S): Homo sapiens  

DISEASE(S): Anaplastic Oligodendroglioma

SUBMITTER: Nabila Elarouci  

PROVIDER: E-MTAB-2772 | ArrayExpress | 2015-08-15

REPOSITORIES: ArrayExpress

Dataset's files

Source:
Action DRS
E-MTAB-2772.idf.txt Idf
E-MTAB-2772.idf.txt_original Idf
E-MTAB-2772.raw.1.zip Raw
E-MTAB-2772.sdrf.txt Txt
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