Transcriptomics

Dataset Information

3

Spatial variation in transcript and protein abundance of Atlantic salmon during feeding migration in the Baltic Sea


ABSTRACT: In this study, transcriptomics was used to investigate Atlantic salmon (Salmo salar) sampled from three different field locations within Baltic Sea (Baltic Main Basin (CBS), Gulf of Finland (GoF) and Bothnian Sea (BS)) during marine migration. RNA labeling, hybridizations, and scanning were performed by the Finnish Microarray and Sequencing Centre in Turku Centre for Biotechnology.

INSTRUMENT(S): Agilent Technologies Scanner, model G2565CA

ORGANISM(S): Salmo salar  

SUBMITTER: Mirella Kanerva   Kristiina A.-M. Vuori  

PROVIDER: E-MTAB-3041 | ArrayExpress | 2015-01-23

REPOSITORIES: ArrayExpress

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Publications

Spatial variation in transcript and protein abundance of Atlantic salmon during feeding migration in the Baltic Sea.

Kanerva Mirella M   Vehmas Anni A   Nikinmaa Mikko M   Vuori Kristiina A KA  

Environmental science & technology 20141201 23


The fitness and reproductive output of fishes can be affected by environmental disturbances. In this study, transcriptomics and label-free proteomics were combined to investigate Atlantic salmon (Salmo salar) sampled from three different field locations within the Baltic Sea (Baltic Main Basin (BMB), Gulf of Finland (GoF), and Bothnian Sea (BS)) during marine migration. The expression of several stress related mRNAs and proteins of xenobiotic metabolism, oxidative stress, DNA damage, and cell de  ...[more]

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