Transcriptomics

Dataset Information

10

Gene expression analysis of MDA MB 231 basal type breast cancer cells with shRNA mediated control (GFP) or ZEB1 knockdown


ABSTRACT: Epithelial-to-mesenchymal transition (EMT) is a fundamental process in development and disease. If aberrantly activated it is a trigger for tumour progression and metastasis (Thiery et al 2009 Cell). It is now known that EMT activation is also associated with the maintenance of stem-cell properties (Mani et al. 2008 Cell). Since Zinc-finger enhancer binding transcription factor 1 (ZEB1) is a crucial EMT activator, we analyzed the changes in the gene expression profile that accompany shRNA mediated loss of ZEB1 in MDA MB 231 basal type breast cancer cells. MDA MB 231 is a cell line that exhibits mesenchymal characteristics, but reverts to an epithelial phenotype upon ZEB1 knock down (Spaderna et al. 2008 Cancer Research). MDA MB 231 cells were stably transfected with control (GFP) or ZEB1 shRNA. Upon puromycin selection, single cell clones were picked and characterized. Cells from two control versus two ZEB1 knockdown clones were harvested, total RNA was isolated and processed to hybridization.

ORGANISM(S): Homo sapiens  

SUBMITTER: Ludger Klein-Hitpass   Simone Brabletz   Thomas Brabletz  

PROVIDER: E-MTAB-3482 | ArrayExpress | 2015-09-15

REPOSITORIES: ArrayExpress

altmetric image

Publications

The EMT-activator ZEB1 induces bone metastasis associated genes including BMP-inhibitors.

Mock Kerstin K   Preca Bogdan-Tiberius BT   Brummer Tilman T   Brabletz Simone S   Stemmler Marc P MP   Brabletz Thomas T  

Oncotarget 20150601 16


Tumor cell invasion, dissemination and metastasis is triggered by an aberrant activation of epithelial-to-mesenchymal transition (EMT), often mediated by the transcription factor ZEB1. Disseminating tumor cells must acquire specific features that allow them to colonize at different organ sites. Here we identify a set of genes that is highly expressed in breast cancer bone metastasis and activated by ZEB1. This gene set includes various secreted factors, e.g. the BMP-inhibitor FST, that are descr  ...[more]

Publication: 1/2

Similar Datasets

2016-06-15 | E-MTAB-3483 | ArrayExpress
2016-06-15 | E-MTAB-3480 | ArrayExpress
2016-06-15 | E-MTAB-3479 | ArrayExpress
2020-07-22 | E-MTAB-8258 | ArrayExpress
2020-07-22 | E-MTAB-8264 | ArrayExpress
2008-06-01 | E-TABM-461 | ArrayExpress
2015-05-28 | PXD000397 | Pride
2012-02-13 | E-MEXP-3547 | ArrayExpress
2020-04-28 | BIOMD0000000940 | BioModels
2020-04-23 | MODEL2004230001 | BioModels