Transcriptomics

Dataset Information

338

RNA-seq analysis of wild type Columbia seedlings


ABSTRACT: RNA was isolated from 14 day old Arabidopsis Col-0 seedlings in three biological repeats using the RNeasy Plant Mini Kit (Qiagen) and DNase I treated (Promega). A Trueseq RNA-Seq library (Illumina) was compiled and sequenced as 50-bp single read using Illumina HiSeq 2000.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Alain Goossens   AndrĂŠs Ritter   Plant Systems Biology data submission  

PROVIDER: E-MTAB-3916 | ArrayExpress | 2017-08-07

SECONDARY ACCESSION(S): ERP012242

REPOSITORIES: ArrayExpress, ENA

altmetric image

Publications


Jasmonate (JA) signaling in plants is mediated by the JASMONATE ZIM-DOMAIN (JAZ) proteins that repress the activity of several transcription factors regulating JA-inducible gene expression. The hormone JA-isoleucine triggers the interaction of JAZ repressor proteins with the F-box protein CORONATINE INSENSITIVE1 (COI1), part of an S-phase kinase-associated protein1/Cullin1/F-box protein COI1 (SCF(COI1)) E3 ubiquitin ligase complex, and their degradation by the 26S proteasome. In Arabidopsis (Ara  ...[more]

Similar Datasets

2017-08-07 | E-MTAB-3915 | ArrayExpress
2018-01-02 | E-MTAB-5001 | ArrayExpress
2016-12-15 | E-MTAB-3018 | ExpressionAtlas
2017-02-04 | E-MTAB-3018 | ArrayExpress
2013-10-28 | E-MTAB-1859 | ArrayExpress
2019-11-12 | PXD010845 | Pride
2011-11-23 | E-GEOD-33905 | ArrayExpress
2019-07-02 | E-MTAB-7939 | ArrayExpress
2010-10-25 | E-GEOD-22472 | ArrayExpress
2011-09-24 | E-GEOD-32318 | ArrayExpress