Transcriptomics

Dataset Information

73

MAGE-seq E.coli infA amplicon high-throughput genotyping data, mutants from Kelsic et al. Cell Systems, 2016


ABSTRACT: MAGE-seq amplicon data from the paper RNA structural determinants of optimal codons revealed by MAGE-seq in Cell Systems 2016 by Kelsic, Chung, Cohen, Park, Wang & Kishony. Data contains read counts for PCR amplicons of the Escherichia coli gene infA: 1) Single codon mutants tiling along the entire gene, with timepoints from growth doublings in rich and minimal medias. 2) Codon pair mutants for positions at the beginning of the gene with timepoints for growth doublings in rich media. 3) Mutations in a hairpin of the 5' UTR for growth in rich media.

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Escherichia coli  

SUBMITTER: Eric Kelsic   Hattie Chung   Harris Wang   Roy Kishony  

PROVIDER: E-MTAB-4020 | ArrayExpress | 2016-10-01

SECONDARY ACCESSION(S): ERP016936

REPOSITORIES: ArrayExpress, ENA

Dataset's files

Source:
Action DRS
E-MTAB-4020.idf.txt Idf
E-MTAB-4020.idf.txt_original Idf
E-MTAB-4020.sdrf.txt Txt
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