Transcriptomics

Dataset Information

297

Transcription profiling by high throughput sequencing of many parental inbreds from a maize nested association mapping population


ABSTRACT: Profiling transcription levels across many parental inbreds from the maize nested association mapping population.

INSTRUMENT(S): Illumina Genome Analyzer IIx

ORGANISM(S): Zea mays  

SUBMITTER: Nathan Springer  

PROVIDER: E-MTAB-4328 | ArrayExpress | 2013-01-30

SECONDARY ACCESSION(S): SRP018088

REPOSITORIES: ArrayExpress, ENA

altmetric image

Publications

Genomic distribution of H3K9me2 and DNA methylation in a maize genome.

West Patrick T PT   Li Qing Q   Ji Lexiang L   Eichten Steven R SR   Song Jawon J   Vaughn Matthew W MW   Schmitz Robert J RJ   Springer Nathan M NM  

PloS one 20140814 8


DNA methylation and dimethylation of lysine 9 of histone H3 (H3K9me2) are two chromatin modifications that can be associated with gene expression or recombination rate. The maize genome provides a complex landscape of interspersed genes and transposons. The genome-wide distribution of DNA methylation and H3K9me2 were investigated in seedling tissue for the maize inbred B73 and compared to patterns of these modifications observed in Arabidopsis thaliana. Most maize transposons are highly enriched  ...[more]

Similar Datasets

2015-01-01 | E-GEOD-63429 | ArrayExpress
2008-02-22 | E-GEOD-10543 | ArrayExpress
2015-12-02 | E-GEOD-63429 | ExpressionAtlas
2020-01-12 | E-MTAB-8633 | ArrayExpress
2012-06-11 | E-MTAB-4233 | ArrayExpress
2015-06-29 | E-MTAB-3173 | ArrayExpress
2008-06-11 | E-GEOD-10237 | ArrayExpress
| GSE67655 | GEO
2012-05-26 | E-GEOD-37411 | ArrayExpress
2016-06-30 | E-GEOD-67655 | ArrayExpress