Transcriptomics

Dataset Information

298

Transcription profiling by high throughput sequencing of a maize hybrid line and its two parental inbred lines grown under sufficient and limiting nitrogen conditions


ABSTRACT: Development of crop varieties with high nitrogen use efficiency (NUE) is crucial for minimizing N loss, reducing environmental pollution and decreasing input cost. Maize is one of the most important crops cultivated worldwide and its productivity is closely linked to the amount of fertilizer used. A survey of the transcriptomes of shoot and root tissues of a maize hybrid line and its two parental inbred lines grown under sufficient and limiting N conditions by mRNA-Seq has been conducted to have a better understanding of how different maize genotypes respond to N limitation.

INSTRUMENT(S): Illumina Genome Analyzer IIx

ORGANISM(S): Zea mays  

SUBMITTER: Gregory Downs  

PROVIDER: E-MTAB-4410 | ArrayExpress | 2014-01-09

SECONDARY ACCESSION(S): SRP033653

REPOSITORIES: ArrayExpress, ENA

altmetric image

Publications

High throughput RNA sequencing of a hybrid maize and its parents shows different mechanisms responsive to nitrogen limitation.

Bi Yong-Mei YM   Meyer Ann A   Downs Gregory S GS   Shi Xuejiang X   El-Kereamy Ashraf A   Lukens Lewis L   Rothstein Steven J SJ  

BMC genomics 20140128


BACKGROUND: Development of crop varieties with high nitrogen use efficiency (NUE) is crucial for minimizing N loss, reducing environmental pollution and decreasing input cost. Maize is one of the most important crops cultivated worldwide and its productivity is closely linked to the amount of fertilizer used. A survey of the transcriptomes of shoot and root tissues of a maize hybrid line and its two parental inbred lines grown under sufficient and limiting N conditions by mRNA-Seq has been condu  ...[more]

Similar Datasets

2014-05-19 | E-GEOD-49681 | ArrayExpress
2008-06-11 | E-GEOD-10236 | ArrayExpress
2014-01-20 | E-MTAB-1555 | ArrayExpress
| GSE59101 | GEO
2008-06-17 | E-GEOD-8194 | ArrayExpress
2008-06-11 | E-GEOD-10237 | ArrayExpress
2015-11-24 | E-MTAB-3847 | ArrayExpress
2010-01-13 | E-GEOD-17932 | ArrayExpress
2015-06-29 | E-MTAB-3173 | ArrayExpress
2014-03-15 | E-MTAB-1558 | ArrayExpress