Transcriptomics

Dataset Information

46

Genotyping by array of amniotic fluid sample from a fetus with developmental abnormalities to detect copy number variations


ABSTRACT: The uploaded results of two samples were SNParray results in our research of which fetal CNVs were detected by noninvasive prenatal test (NIPT) and confirmed by microarray results. Sample ZNY162 received prenatal diagnosis because at 17 gestational week the pregnant woman received NIPT showing 23Mb microdeletion in Chr18. Later ultrasound examination showed developmental anomalies of feet and the 13th ribs. The pregnant woman received amniocentesis and SNParray at the 21st gestational week, which confirmed the existence of the microdeletion in Chr18. DNA was extracted from 10ml amniotic fluid and tested by Affymetrix CytoScan HD array to detect CNVs in whole genome, showing arr 18q22.3q23(69,461,933-78,014,123) ×1. Sample LMQ155 received prenatal diagnosis because of advanced maternal age and NIPT result of a 2.29Mb microduplication in Chr13 at 15 gestational week. Amniocentesis was performed at the 17th gestational week. Affymetrix CytoScan HD array were used to detect fetal CNVs in whole genome, which showed arr 13q21.2(60,399,612-61,730,194) ×3 that was consistent with NIPT result.

ORGANISM(S): Homo sapiens  

SUBMITTER: Zhiyang HU  

PROVIDER: E-MTAB-4738 | ArrayExpress | 2016-11-16

REPOSITORIES: ArrayExpress

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Publications

Performance Evaluation of NIPT in Detection of Chromosomal Copy Number Variants Using Low-Coverage Whole-Genome Sequencing of Plasma DNA.

Liu Hongtai H   Gao Ya Y   Hu Zhiyang Z   Lin Linhua L   Yin Xuyang X   Wang Jun J   Chen Dayang D   Chen Fang F   Jiang Hui H   Ren Jinghui J   Wang Wei W  

PloS one 20160714 7


The aim of this study was to assess the performance of noninvasively prenatal testing (NIPT) for fetal copy number variants (CNVs) in clinical samples, using a whole-genome sequencing method.A total of 919 archived maternal plasma samples with karyotyping/microarray results, including 33 CNVs samples and 886 normal samples from September 1, 2011 to May 31, 2013, were enrolled in this study. The samples were randomly rearranged and blindly sequenced by low-coverage (about 7M reads) whole-genome s  ...[more]

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