Transcriptomics

Dataset Information

364

Expression data from Ribonuclease Inhibitor (RI/Rnh1) deficient Human K562 cells


ABSTRACT: Summary: Ribonuclease Inhibitor (RI also known as Rnh1) is a 50 kDa, ubiquitously expressed leucine-rich repeat (LRR) protein. It is localized in cytosol and binds to pancreatic-type ribonucleases and inhibit their function. However, the entire biological role for Rnh1 is unknown. We generated RNH1 knock out K562 cells by CRISPR/Cas9 method. Here we studied differential gene expression from wild type and RNH1 knock out K562 cells by RNA-Seq analysis. Overall design: Total RNA was isolated from wild type and RNH1 deficient K562 cells.

INSTRUMENT(S): Illumina HiSeq 3000

ORGANISM(S): Homo sapiens  

SUBMITTER: Cedric Simillion  

PROVIDER: E-MTAB-5162 | ArrayExpress | 2017-03-05

SECONDARY ACCESSION(S): ERP021688

REPOSITORIES: ArrayExpress, ENA

altmetric image

Publications


Ribosomal proteins (RP) regulate specific gene expression by selectively translating subsets of mRNAs. Indeed, in Diamond-Blackfan anemia and 5q- syndrome, mutations in RP genes lead to a specific defect in erythroid gene translation and cause anemia. Little is known about the molecular mechanisms of selective mRNA translation and involvement of ribosomal-associated factors in this process. Ribonuclease inhibitor 1 (RNH1) is a ubiquitously expressed protein that binds to and inhibits pancreatic-  ...[more]

Similar Datasets

2013-07-01 | E-GEOD-48146 | ArrayExpress
2019-11-12 | PXD010845 | Pride
2017-11-10 | E-MTAB-5739 | ArrayExpress
| GSE82220 | GEO
2016-03-14 | E-GEOD-78730 | ArrayExpress
2019-08-19 | E-MTAB-8035 | ArrayExpress
2015-06-10 | E-GEOD-65235 | ArrayExpress
2018-12-21 | E-MTAB-7283 | ArrayExpress
2015-06-09 | E-GEOD-63591 | ArrayExpress
| PRJEB19635 | ENA