Project description:Gradient fractions of RNAi of XAC1 (Tb927.7.2780) in Trypanosoma brucei bloodstream forms. RNAi was induced using tetracycline and cell extracts were fractionated into polysomal and monosome-non-ribosome-associated fractions.

2017-12-16 | E-MTAB-6239 | ArrayExpress

RNA-Seq data: RNA-IP (TAP-ZC3H30 pull down followed by RNA-Seq) and total transcriptomics (Effect of ZC3H30 gene deletion) in procyclic form of T. brucei

Project description:The first 4 samples belong to the RNA-IP using in situ TAP tagged ZC3H30 in procyclic (insect) form of the parasite T. brucei Lister 427, 2 samples are Elu or eluate, and 2 are FL or flowthrough (unbound) sample. The other 8 samples are also from procyclic cells. 4 samples belong to DKO(ZC3H30 gene double knockout), 2 are non-stressed and 2 are heat shocked samples; the rest 4 samples are DKO-ectopic (ZC3H30 double knockouts, expressing, ectopic copy of ZC3H30) 2 are non-stressed and 2 are heat shocked samples. Heat Shock experiment was done at 39 degree Celsius.

2017-12-16 | E-MTAB-6281 | ArrayExpress

Transcriptome sequencing of bloodstream form Trypanosoma brucei expressing VSG121

Project description:Cells were grown in HMI-9 and RNA prepared using QIAGEN RNAeasy kit.

2017-02-12 | E-MTAB-5460 | ArrayExpress

RNA-IP of TAP-tagged 4EIP in Trypanosoma brucei

Project description:RNA-IP of TAP-tagged 4EIP in Trypanosoma brucei

| PRJEB23807 | ENA

RIP-Seq of ERBP1 (Tb927.10.14150) in Trypanosoma brucei

Project description:Pull-down of endogenous N-terminally TAP-tagged ERBP1 (Tb927.10.14150). RNA of unbound and eluted samples was purified, rRNA of unbound sample was depleted, and RNA was analysed by RNA-Seq.

2019-08-31 | E-MTAB-8257 | ArrayExpress

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