Transcriptomics

Dataset Information

425

RNA-Seq of planarian Schmidtea mediterranea during head regeneration


ABSTRACT: The head-regeneration transcriptome of the planarian Schmidtea mediterranea

INSTRUMENT(S): Illumina Genome Analyzer II, AB SOLiD System 3.0

ORGANISM(S): Schmidtea mediterranea  

TISSUE(S): Head, Trunk And Tail Fragments, Pre-pharyngeal Fragment, Regenerating The Head, Whole Organism

SUBMITTER: Thomas Sandmann  

PROVIDER: E-MTAB-607 | ArrayExpress | 2011-07-15

SECONDARY ACCESSION(S): ERP000581

REPOSITORIES: ArrayExpress, ENA

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Publications

The head-regeneration transcriptome of the planarian Schmidtea mediterranea.

Sandmann Thomas T   Vogg Matthias C MC   Owlarn Suthira S   Boutros Michael M   Bartscherer Kerstin K  

Genome biology 20110816 8


<h4>Background</h4>Planarian flatworms can regenerate their head, including a functional brain, within less than a week. Despite the enormous potential of these animals for medical research and regenerative medicine, the mechanisms of regeneration and the molecules involved remain largely unknown.<h4>Results</h4>To identify genes that are differentially expressed during early stages of planarian head regeneration, we generated a de novo transcriptome assembly from more than 300 million paired-en  ...[more]

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