Transcriptomics

Dataset Information

322

STRT RNAseq of pluripotent stem cells reprogrammed with CRISPRa


ABSTRACT: Transcriptome comparison of CRISPRa induced human pluripotent stem cell lines, control iPSC line induced with Sendai viral vectors, H9 embryonic stem cell line and human foreskin fibroblasts.

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Homo sapiens  

SUBMITTER: Shintaro Katayama  

PROVIDER: E-MTAB-6185 | ArrayExpress | 2018-06-07

SECONDARY ACCESSION(S): ERP105727

REPOSITORIES: ArrayExpress, ENA

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Publications


CRISPR-Cas9-based gene activation (CRISPRa) is an attractive tool for cellular reprogramming applications due to its high multiplexing capacity and direct targeting of endogenous loci. Here we present the reprogramming of primary human skin fibroblasts into induced pluripotent stem cells (iPSCs) using CRISPRa, targeting endogenous OCT4, SOX2, KLF4, MYC, and LIN28A promoters. The low basal reprogramming efficiency can be improved by an order of magnitude by additionally targeting a conserved Alu-  ...[more]

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