Transcriptomics

Dataset Information

299

Transcription profiling by high throughput sequencing of human breast cancer cell lines in a nuclear run-on sequencing analysis of histone deacetylase inhibition


ABSTRACT: nuclear run-on sequencing analysis of histone deacetylase inhibition

INSTRUMENT(S): Illumina Genome Analyzer

ORGANISM(S): Homo sapiens  

DISEASE(S): Normal,Breast Cancer

SUBMITTER: Tae Hoon Kim  

PROVIDER: E-MTAB-668 | ArrayExpress | 2012-11-30

SECONDARY ACCESSION(S): ERP000685

REPOSITORIES: ArrayExpress, ENA

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Publications

HDAC inhibitors induce transcriptional repression of high copy number genes in breast cancer through elongation blockade.

Kim Y J YJ   Greer C B CB   Cecchini K R KR   Harris L N LN   Tuck D P DP   Kim T H TH  

Oncogene 20130225 23


Treatment with histone deacetylase inhibitors (HDACI) results in potent cytotoxicity of a variety of cancer cell types, and these drugs are used clinically to treat hematological tumors. They are known to repress the transcription of ERBB2 and many other oncogenes, but little is known about this mechanism. Using global run-on sequencing (GRO-seq) to measure nascent transcription, we find that HDACI cause transcriptional repression by blocking RNA polymerase II elongation. Our data show that HDAC  ...[more]

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