Dataset Information


RNA-seq of wild type Mycobacterium smegmatis mc2 155 (exponential and stationary phase) and Ms1 deletion strain (exponential and stationary phase)

ABSTRACT: Ms1 RNA is ~300 nt sRNA that is highly expressed in stationary phase of growth and binds to the RNA polymerase (RNAP) core. We assume that by binding to RNAP, Ms1 could regulate transcription. Our aim was to reveal the most prominent changes in the transcriptome upon entry into stationary phase that might be dependent on Ms1. We performed RNA-seq data to characterize exponential (Ms_WT_exp) and stationary phase (Ms_WT_stat) transcriptome in M. smegmatis in wild type cells. In addition, we compared the transcriptome of the Ms1 knockout cells (Ms_KO_stat) with wild type cells in stationary phase and in exponential phase (Ms_KO_exp).

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Mycolicibacterium Smegmatis

SUBMITTER: Martin Prevorovsky   Michaela Sikova   Jarmila Hnilicova   Libor Krasny  

PROVIDER: E-MTAB-7004 | ArrayExpress | 2018-11-12



Dataset's files

Action DRS
E-MTAB-7004.idf.txt Idf
E-MTAB-7004.idf.txt_original Idf
E-MTAB-7004.sdrf.txt Txt
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