RNA-seq of wild type Mycobacterium smegmatis mc2 155 (exponential and stationary phase) and Ms1 deletion strain (exponential and stationary phase)
ABSTRACT: Ms1 RNA is ~300 nt sRNA that is highly expressed in stationary phase of growth and binds to the RNA polymerase (RNAP) core. We assume that by binding to RNAP, Ms1 could regulate transcription. Our aim was to reveal the most prominent changes in the transcriptome upon entry into stationary phase that might be dependent on Ms1. We performed RNA-seq data to characterize exponential (Ms_WT_exp) and stationary phase (Ms_WT_stat) transcriptome in M. smegmatis in wild type cells. In addition, we compared the transcriptome of the Ms1 knockout cells (Ms_KO_stat) with wild type cells in stationary phase and in exponential phase (Ms_KO_exp).
INSTRUMENT(S): Illumina HiSeq 2000
ORGANISM(S): Mycolicibacterium Smegmatis
SUBMITTER: Martin Prevorovsky Michaela Sikova Jarmila Hnilicova Libor Krasny
PROVIDER: E-MTAB-7004 | ArrayExpress | 2018-11-12
SECONDARY ACCESSION(S): ERP109850
REPOSITORIES: ArrayExpress, ENA