Transcriptomics

Dataset Information

0

Arabidopsis tissue atlas


ABSTRACT: We used state of the art mass spectrometry and RNA sequencing (RNA-Seq) to provide the first integrated proteomic, phosphoproteomic and transcriptomic atlas of Arabidopsis. For this we measured 30 different Arabidopsis tissues from adult plants, seedlings, callus and cell culture samples to an average depth of 17,603 +/- 1,317 transcripts, 14,430 +/- 911 proteins and 14,689 +/- 2,509 phosphorylation sites. In total we provide protein expression data for 66 % and transcript expression data for 90 % of the annotated protein coding genes (Araport11). For four plant organs we additionally measured consecutive growth stages (rosette leaves, 13 stages; flower, 6 stages; silique, 5 stages; seed, 5 stages).

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Julia Mergner   Bernhard Kuster  

PROVIDER: E-MTAB-7978 | ArrayExpress | 2020-01-10

SECONDARY ACCESSION(S): ERP115370

REPOSITORIES: ArrayExpress, ENA

altmetric image

Publications


Plants are essential for life and are extremely diverse organisms with unique molecular capabilities1. Here we present a quantitative atlas of the transcriptomes, proteomes and phosphoproteomes of 30 tissues of the model plant Arabidopsis thaliana. Our analysis provides initial answers to how many genes exist as proteins (more than 18,000), where they are expressed, in which approximate quantities (a dynamic range of more than six orders of magnitude) and to what extent they are phosphorylated (  ...[more]

Similar Datasets

2020-04-01 | E-MTAB-8857 | ArrayExpress
2014-04-01 | E-GEOD-54724 | ArrayExpress
2015-07-01 | E-GEOD-59983 | ArrayExpress
2019-06-12 | E-MTAB-7689 | ArrayExpress
2014-02-26 | E-GEOD-50192 | ArrayExpress
2008-10-21 | E-GEOD-11951 | ArrayExpress
2014-02-16 | E-GEOD-51245 | ArrayExpress
2016-03-31 | E-GEOD-77094 | ArrayExpress
2012-10-27 | E-GEOD-41872 | ArrayExpress
2016-07-12 | E-MTAB-4389 | ArrayExpress