Transcriptomics

Dataset Information

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Arabidopsis tissue atlas


ABSTRACT: We used state of the art mass spectrometry and RNA sequencing (RNA-Seq) to provide the first integrated proteomic, phosphoproteomic and transcriptomic atlas of Arabidopsis. For this we measured 30 different Arabidopsis tissues from adult plants, seedlings, callus and cell culture samples to an average depth of 17,603 +/- 1,317 transcripts, 14,430 +/- 911 proteins and 14,689 +/- 2,509 phosphorylation sites. In total we provide protein expression data for 66 % and transcript expression data for 90 % of the annotated protein coding genes (Araport11). For four plant organs we additionally measured consecutive growth stages (rosette leaves, 13 stages; flower, 6 stages; silique, 5 stages; seed, 5 stages).

INSTRUMENT(S): Illumina HiSeq 2500

ORGANISM(S): Arabidopsis thaliana  

SUBMITTER: Julia Mergner   Bernhard Kuster  

PROVIDER: E-MTAB-7978 | ArrayExpress | 2020-01-10

SECONDARY ACCESSION(S): ERP115370

REPOSITORIES: ArrayExpress, ENA

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