Transcriptomics

Dataset Information

9

DNA-seq or genomic RNA region of HIV-1 reverse transcriptase, protease and integrase gene


ABSTRACT: To assess compatibility in sequence analysis we compared results from Sanger sequencing (with sequencing threshold >15%) and Next Generation Sequencing (with sequencing treshold >5%). Totally, there were 48 patients included in this part of the study but sequencing for one sample failed. Here we demonstrate how reliable tool for fast and accurate identification of low-level viral quasispecies is deep-sequencing.

INSTRUMENT(S): Illumina MiniSeq

ORGANISM(S): Homo sapiens  

SUBMITTER: Maja Oroz  

PROVIDER: E-MTAB-8153 | ArrayExpress | 2019-07-29

SECONDARY ACCESSION(S): ERP116396

REPOSITORIES: ArrayExpress, ENA

Dataset's files

Source:
Action DRS
E-MTAB-8153.idf.txt Idf
E-MTAB-8153.idf.txt_original Idf
E-MTAB-8153.processed.1.zip Processed
E-MTAB-8153.sdrf.txt Txt
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