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E-GEOD-23330

ABSTRACT: Transcription profiling by array of Arabidopsis mutant for vtc1 or abi4

OTHER RELATED OMICS DATASETS IN: PRJNA133295PRJNA131211PRJNA133297

PROVIDER: E-GEOD-23330 | ExpressionAtlas | 2014-09-10

REPOSITORIES: ExpressionAtlas

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Dataset's files

Source:

			Action	DRS
	E-GEOD-23330-analysis-methods.tsv	Tabular
	E-GEOD-23330-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-23330-configuration.xml	Xml
	E-GEOD-23330-percentile-ranks.tsv	Tabular
	E-GEOD-23330.condensed-sdrf.tsv	Tabular

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1 - 5 of 77

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E-GEOD-23329

Project description:Transcription profiling by array of Arabidopsis mutant for abi4 and/or vtc2

2014-09-10 | E-GEOD-23329 | ExpressionAtlas

Transcriptome analysis of vtc1, abi4-102 and wild type Col 0

Project description:The role of abscisic acid (ABA) signalling in the ascorbic acid (AA)-dependent control of plant growth and defence was determined using the vtc1 and vtc2 mutants, which have impaired ascorbic acid synthesis, and in the abi4 mutant that is impaired in ABA-signalling. ABA levels were increase in the mutants relative to the wild type (Col0). Like vtc1 the vtc2 mutants have a slow growth relative to Col0. However, the wild type phenotype is restored in the abi4vtc2 double mutant. Similarly, the sugar sensing phenotype of in the abi4 is reversed in the abi4vtc2 double mutant. The vtc1 and vtc2 leaf transcriptomes show up to 70 % homology with abi4. Of the transcripts that are altered in the mutants a relative to Col0, only a small number are reversed in the abi4vtc2 double mutants relative to either abi4 or vtc2. We conclude that AA controls growth via an ABA and abi4-dependent signalling pathway. The vtc and abi4 mutants have enhanced glutathione levels and common redox signalling pathways leading to similar gene expression patterns.

2011-08-26 | GSE23330 | GEO

Transcriptome analysis of vtc2, abi4-102 and the corresponding double mutant abi4 vtc2

2011-08-26 | GSE23329 | GEO

E-GEOD-25067

Project description:Transcription profiling by array of Arabidopsis mutant for ddm1

2014-07-03 | E-GEOD-25067 | ExpressionAtlas

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2014-07-03 | E-GEOD-5737 | ExpressionAtlas

E-GEOD-31033

Project description:Transcription profiling by array of Arabidopsis mutant for frb1

2014-07-03 | E-GEOD-31033 | ExpressionAtlas

E-GEOD-6158

Project description:Transcription profiling by array of Arabidopsis mutant for acn1

2014-07-03 | E-GEOD-6158 | ExpressionAtlas

E-GEOD-14229

Project description:Transcription profiling by array of Arabidopsis mutant for myb5

2014-07-03 | E-GEOD-14229 | ExpressionAtlas

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Project description:Transcription profiling by array of Arabidopsis mutant for AtATM

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Project description:Transcription profiling by array of Arabidopsis mutant for rts1

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