Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-24365

ABSTRACT: RNA-seq of Chlamydomonas reinhardtii response to nitrogen deprivation

PROVIDER: E-GEOD-24365 | ExpressionAtlas | 2018-01-04

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-24365-analysis-methods.tsv	Tabular
	E-GEOD-24365-analytics.tsv	Tabular
	E-GEOD-24365-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-24365-configuration.xml	Xml
	E-GEOD-24365-g2_g1-mvaPlot.png	Other

Items per page:

1 - 5 of 21

Similar Datasets

RNA-Seq of Chromochloris zofingiensis in response to nitrogen deprivation

Project description:RNA-Seq of Chromochloris zofingiensis in response to nitrogen deprivation

| PRJNA454009 | ENA

Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

Project description:We report the transcriptomic response of a moderately growing subisolate from the culture of Botryococcus sp. CCALA-779 upon nitrogen deprivation (ND). Examination of transcriptomes upon nitrogen deprivation (ND). B.braunii_non_redundant_transcriptome_assembly_61220.fasta: non-redundant assembly (with 61220 in number) of B.braunii 779 transcriptome in this study B.braunii_annotated_12292.fasta: investigated ESTs (with 12292 in number, which perfectly matches with our processed RNA expression profiling) in this study

2015-08-03 | E-GEOD-71296 | biostudies-arrayexpress

E-ENAD-12

Project description:RNA-seq of Chlamydomonas reinhardtii response to nitrogen deprivation in cht7 mutant plants

2018-01-04 | E-ENAD-12 | ExpressionAtlas

Transcriptomic analysis of a moderately growing subisolate Botryococcus braunii 779 (Chlorophyta) in response to nitrogen deprivation

Project description:We report the transcriptomic response of a moderately growing subisolate from the culture of Botryococcus sp. CCALA-779 upon nitrogen deprivation (ND).

2015-08-03 | GSE71296 | GEO

Transcriptome of nitrogen depleted Dunaliella salina

Project description:Illumina HiseqTM2000 RNA-sequencing of Dunaliella salina under nitrogen deprivation condition was performed.

2019-02-23 | GSE97378 | GEO

Nitrogen-reponsive transcriptome of a mutant strain of Nostoc sp. PCC 7120 lacking nsiR3 (ΔnsiR3)

Project description:In order to identify possible RNAs regulated by small RNA NsiR3 we have analyzed the responses to nitrogen removal in a mutant lacking nsiR3 (ΔnsiR3). RNA samples were isolated from cells growing in the presence of combined nitrogen (ammonium) or after 8 h of nitrogen deprivation.

2020-08-25 | GSE150191 | GEO

Transcript responses of lipid accumulation in Auxenochlorella pyrenoidosa to varying nitrogen deprivation

Project description:Varying levels of nitrogen deprivation can improve lipid accumulation differently in microalgae, whose underlying regulations are unknown. To investigate the related mechanisms, Auxenochlorella pyrenoidosa was exposed to 1.5, 1, 0.5 and 0 g/L sodium nitrate (NaNO3) for 5 days and RNA-seq were detected.

2023-06-06 | GSE233967 | GEO

Nostoc sp. PCC 7120 = FACHB-418

Project description:Transcriptional Regulation of Anabaena 7120 response to Nitrogen Deprivation

| PRJNA136453 | ENA

Iron uptake experiments in yeast

Project description:The budding yeast S. cerevisiae responds to depletion of iron in the environment by activating Aft1p, the major iron-dependent transcription factor, and by transcribing systems involved in the uptake of iron. Here we have studied the transcriptional response to iron deprivation, and have identified new Aft1p target genes. We find that other metabolic pathways are regulated by iron: biotin uptake and biosynthesis, nitrogen assimilation, and purine biosynthesis. Two enzymes active in these pathways, biotin synthase and glutamate synthase, require an iron-sulfur cluster for activity. Iron deprivation activates transcription of the biotin importer and simultaneously represses transcription of the entire biotin biosynthetic pathway. Multiple genes involved in nitrogen assimilation and amino acid metabolism are induced by iron deprivation, while glutamate synthase, a key enzyme in nitrogen assimilation, is repressed. A CGG palindrome within the promoter of glutamate synthase confers iron-regulated expression, suggesting control by a transcription factor of the binuclear zinc cluster family. We provide evidence that yeast subjected to iron deprivation undergo a transcriptional remodeling, resulting in a shift from iron-dependent to parallel, but iron-independent, metabolic pathways. A dose response design type examines the relationship between the size of the administered dose and the extent of the response of the organism(s). Keywords: dose_response_design

2006-02-08 | GSE4196 | GEO

ena-DATASET-UOMCAP-24-11-2020-23:19:59:840-777 - samples

Project description:Aligned whole-genome sequencing and RNA-seq of localised prostate cancer for study 'Loss of SNAI2 in prostate cancer correlates with clinical response to androgen deprivation therapy'.

| EGAD00001006640 | EGA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data