Browse
Submit Data
Databases
API
Help

Dataset Information

8 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-30712

ABSTRACT: Expression data from Arabidopsis thaliana under dark and far-red light

OTHER RELATED OMICS DATASETS IN: PRJNA154683PRJNA144375PRJNA154685

PROVIDER: E-GEOD-30712 | ExpressionAtlas | 2015-06-01

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Similar Datasets

Genome-wide Binding Site Analysis of FAR-RED ELONGATED HYPOCOTYL 3 Reveals Its Novel Function in Arabidopsis Development

Project description:This SuperSeries is composed of the following subset Series: GSE30711: ChIP-Seq data from Arabidopsis thaliana under dark and far-red light GSE30712: Expression data from Arabidopsis thaliana under dark and far-red light Refer to individual Series

2011-12-31 | E-GEOD-30713 | biostudies-arrayexpress

Arabidopsis thaliana

Project description:Expression data from Arabidopsis thaliana under dark and far-red light

| PRJNA154685 | ENA

Arabidopsis thaliana

Project description:ChIP-Seq data from Arabidopsis thaliana under dark and far-red light

| PRJNA154683 | ENA

Gene expression in luh mutant seeds in the dark: wild type (Col-0) vs. luh mutant

Project description:Transcriptional profiling of Arabidopsis far-red light pulse treated seeds comparing luh mutant with wild type (Col-0). Seeds were imbibed within 1 hr under white light and treated far-red light pulse for 5 min followed by 12 hr dark incubation. Goal was to determine the effects of LUH as transcriptional co-regulator during seed germination process.

2015-09-27 | GSE70406 | GEO

Transcriptional characterization of Arabidopsis thaliana seeds treated with a red- or far red-light pulse

Project description:The goal of this study was to compare the transcriptional profile (RNA-seq) of imbibed Arabidopsis thaliana Columbia-0 ecotype seeds that were treated with a 20 min red or far red pulse. The red-light pulse induces germination.

2019-07-10 | GSE134019 | GEO

RNA-seq of a time series experiment of leaf 3 tissue (primordia / leaf blade) of Arabidopsis plants grown under EoD FR since day 6, since day 18 or under WL conditions.

Project description:This RNA-seq was designed to help gain understanding on the genetic program behind phytochrome developmental time dependent control of leaf 3 (L3) cell proliferation and expansion phases, to ultimately regulate organ growth. Briefly, Arabidopsis thaliana Col-0 plants were grown under a light : dark (LD) 12 h : 12 h photoperiod, at a 100 µmoles/m2/s fluence rate and 21 °C of constant temperature. Plants were then exposed to either daily End of Day (EoD) far-red (FR, 40µmoles/m2/s of FR light (730nm) for 10 minutes) from day 6 and harvested L3 primordia or blade tissue at days 13, 16 and 20, or EoD FR from day 18, sampling at day 20. Plant kept under white light (WL) conditions were used as controls.

2021-02-18 | E-MTAB-9445 | biostudies-arrayexpress

Expression data from low R:FR - JA crosstalk in Arabidopsis

Project description:Low reduced red:far-red ratio [R:FR] signaling through phytochromes induces shade avoidance responses, including petiole elongation. Jasmonic acid-mediated defense against herbivores and pathogens is inhibited under these conditions. Using microarrays we studied the crosstalk between low R:FR and JA at the global gene expression level in Arabidopsis thaliana.

2012-05-01 | GSE35700 | GEO

ATH1 Transcriptome profiling of dark grown photoreceptor mutants seedlings of Arabidopsis

Project description:Phytochromes mediate a profound developmental shift when dark-grown seedlings are exposed to light. Here we show that a subset of genes is up regulated in phytochrome B (phyB) mutants even before dark-grown seedlings are exposed to light. Most of these genes bear the RY cis motif, which is a binding site of the transcription factor ABSCISIC ACID INSENSITIVE 3 (ABI3), and the phyB mutation also enhanced ABI3 expression. These changes in transcriptome have physiological consequences as seedlings of the abi3 mutant showed enhanced responses to pulses of far-red light, while ABI3 overexpressers exhibited the opposite pattern. Seedlings of the wild type derived from seeds germinated in full darkness showed enhanced expression of genes bearing the RY cis motif and reduced responses to far-red light. We propose that, via changes in ABI3 expression, light, perceived mainly by phyB in the seed, generates a downstream trans-developmental phase signal that pre-conditions the seedling to its most likely environment. Keywords: Arabidopsis, photoreceptors, light signal transduction, environmental responses

2005-09-04 | GSE3038 | GEO

Transcriptome profiling of dark grown photoreceptor mutants seedlings of Arabidopsis ATH1

2005-09-04 | GSE3002 | GEO

Transcriptome profiling of dark grown photoreceptor mutants of Arabidopsis.

2005-09-04 | GSE2919 | GEO