Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-41326

ABSTRACT: Transcription profiling by array of HepG2 cells after RNAi knock-down of RNF43

PROVIDER: E-GEOD-41326 | ExpressionAtlas | 2025-01-24

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-41326-analysis-methods.tsv	Tabular
	E-GEOD-41326-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-41326-configuration.xml	Xml
	E-GEOD-41326-percentile-ranks.tsv	Tabular
	E-GEOD-41326-zoomifications-log.tsv	Tabular

Items per page:

1 - 5 of 67

Similar Datasets

Expression Data from HNF4a RNAi Knockdown in HepG2 cells

Project description:HNF4a is an important liver transcription factor that regulates at least a thousand genes in the liver. Here we used expression profiling in HepG2 cells, a hepatocellular carcinoma cell line, in which HNF4a was knocked down by RNAi to identify some of those target genes. This dataset accompanies the article in Hepatology 2010 Feb;51(2):642-53. Integrated approach for the identification of human hepatocyte nuclear factor 4alpha target genes using protein binding microarrays by Bolotin E, Liao H, Ta TC, Yang C, Hwang-Verslues W, Evans JR, Jiang T, Sladek FM. RNA interference (RNAi) against HNF4a2 was performed in HepG2 cells using small, interfering RNAs (siRNAs) corresponding to nucleotides +179 to +197 of human HNF4A (NM_178849, sense siRNA: 5'-UGUGCAGGUGUUGACGAUGdTdT-3', antisense siRNA 5'-CAUCGUCAACACCUGCACAdTdT-3') (Dharmacon, Lafayette, CO). Total RNA was extracted with Trizol (Life Technologies, Carlsbad, CA) and reverse transcribed with the Reverse Transcription System (Promega, Madison, WI). Polymerase chain reaction (PCR) amplification was performed in the linear range (see Supporting Table 3B for a list of PCR primers). Expression profiling analysis was performed with Affymetrix oligonucleotide arrays (HGU133 Plus 2.0) using RNA from control (PGL3 siRNA) or treated (HNF4a siRNA) HepG2 cells

2011-05-05 | E-GEOD-29084 | biostudies-arrayexpress

Gene expression analysis of PJA1 knock down HepG2 cells or HepG2 cells treated with TGF-beta1.

Project description:Gene expression analysis of PJA1 knock down HepG2 cells or HepG2 cells treated with TGF-beta1.

| PRJNA548810 | ENA

unidentified

Project description:Expression data of HepG2 cells under siRNA knock down of 13 liver enriched transcription factors (CBX81)

| PRJDB20058 | ENA

Project description:mRNA-seq Rawdata of TJP2 knock-down LO2 cells/control LO2 cells and HepG2 cells/control HepG2 cells

| PRJNA702616 | ENA

Mus musculus

Project description:Transcription profile of FBL-knock down ES cells

| PRJNA221258 | ENA

MYCN knock-down leads to DNA-repair deficiency in human neuroblastoma (Mnase-Seq)

Project description:We knock down MYCN in human neuroblastoma cell line by RNAi. MYCN knock-down caused global epigenome change, including nucleosome gain on key DNA-repair genes and promoter H3K9ac down regulation.

2019-06-30 | GSE120857 | GEO

MYCN knock-down leads to DNA-repair deficiency in human neuroblastoma (ChIP-Seq)

2019-06-30 | GSE120856 | GEO

Effect of depletion of UBL5 on gene expression in hepatocellular carcinoma cell lines HepG2 and Huh7

Project description:To determine the effects of UBL5 on genome-wide gene expression, we used UBL5 siRNA to knock down UBL5 in HepG2 and Huh7 cells. We then performed gene expression profiling analysis using data obtained from RNA-seq.

2023-06-13 | GSE209935 | GEO

Homo sapiens

Project description:Small RNA analysis of ADAR1-knock down HeLa cells by RNAi

| PRJNA184835 | ENA

Homo sapiens

Project description:RNAi-mediated MLL/AF4 knock-down time course

| PRJNA290444 | ENA