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E-GEOD-53197

ABSTRACT: Transcription profiling by high throughput sequencing from seedling, root, and floral buds of 17 Arabidopsis thaliana accessions

TISSUE(S): Floral Bud, Root, Aerial Part

PROVIDER: E-GEOD-53197 | ExpressionAtlas | 2016-04-07

REPOSITORIES: ExpressionAtlas

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Dataset's files

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			Action	DRS
	E-GEOD-53197-analysis-methods.tsv	Tabular
	E-GEOD-53197-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-53197-coexpressions.tsv.gz	Tabular
	E-GEOD-53197-configuration.xml	Xml
	E-GEOD-53197-factors.xml	Xml

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Project description:We produced RNA-Seq reads from messenger RNA isolated from seedling, root, and floral bud tissue for 17 MAGIC founder accessions (inbred strains) of Arabidopsis thaliana (see Gan et al. 2011. Nature, 477:419-23 for a description of the MAGIC genetic mapping resource). The resulting RNA-Seq data provide a resource to assess tissue-specific expression across different accessions of A. thaliana. Note that comparable read data for accessions Col-0 and Can-0, which are also founders of the MAGIC lines, has previously been released under GEO series GSE30795 (Gan et al. 2011. Nature, 477:419-23). Examination of RNA expression across tissues (seedling, root, floral bud) for 17 Arabidopsis thaliana accessions (Bur-0, Ct-1, Edi-0, Hi-0, Kn-0, Ler-0, Mt-0, No-0, Oy-0, Po-0, Rsch-4, Sf-2, Tsu-0, Wil-2, Ws-0, Wu-0, Zu-0).

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