Project description:5'-complete cDNA sequencing on ribosome-depleted total RNA from the human K562 cell line. Provides high-quality, genome-wide single-base resolution profiling of transcription start sites and their expression levels. This dataset represents a whole-genome, single-base resolution profiling of transcription start site (TSS) expression in the human K562 cell line. These profiles were established using RAMPAGE, a high-throughput, high-accuracy 5'-complete cDNA sequencing method implemented on the Illumina platform. The data was analyzed using custom scripts and algorithms that are all available upon request.

2012-08-30 | E-GEOD-36200 | biostudies-arrayexpress

Single cell RNA-Seq of I2A rhabdoid cell line

Project description:We report the application of single-molecule-based sequencing technology for high-throughput profiling of I2A cell line Examination of gene expression in I2A rhabdoid cell line, as a negative control

2020-02-14 | GSE130021 | GEO

Overexpression of eukaryotic translation initiation factor, eIF4E confers tamoxifen resistance in breast cancer via the ERα/FOXM1 axis

Project description:We report the application of RNA sequencing technology for high-throughput profiling of mRNA expression in breast cancer cell line

2019-06-18 | GSE132851 | GEO

Single cell RNA-Seq of Neuroblastoma cell line (CLB-berlud)

Project description:We report the application of single-molecule-based sequencing technology for high-throughput profiling of Neuroblastoma cell line (CLB-berlud) Examination of gene expression in Neuroblastoma cell line (CLB-berlud), as a negative control

2020-02-14 | GSE130022 | GEO

To explore the relationship between new gene expression / mutation and survival of patients in colorectal cancer

Project description:Interventions: Case vs control:No Primary outcome(s): High-throughput sequencing Study Design: Case-Control study

| 2676067 | ecrin-mdr-crc

Human bladder cancer cell line high throughput sequencing

Project description:Human bladder cancer cell line high throughput sequencing

| PRJNA723863 | ENA

Effect of FOXA1 knockdown on gene expression in sulfasalazine-resistant OSC19SSZR cells

Project description:High-throughput sequencing was performed to analyze genes regulated by the transcription factor FOXA1 in OSC19SSZR cells, a sulfasalazine-resistant oral squamous cell carcinoma cell line.

2023-09-15 | GSE241108 | GEO

Time-resolved single cell transcriptomics of an ibrutinib-treated mantle cell lymphoma cell line

Project description:We performed a high-throughput droplet-based single-cell RNA sequencing experiment on a sensitive MCL cell line model (REC-1) treated with ibrutinib over time using the 10x Genomics platform. Two biological replicates were generated of an untreated control, 6 h, and 48 h ibrutinib-treated cells.

2021-02-25 | GSE162234 | GEO

miRNA expression of human cancer and mouse cell lines

Project description:miRNA expression profile Keywords: small RNA profiling by high throughput sequencing The small RNA fraction (18-30nt) was cloned and sequenced from total RNA of each cell line

2009-08-24 | E-GEOD-16579 | biostudies-arrayexpress

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