Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-60551

ABSTRACT: Transcription profiling by array of HaCat cells with or without over-expression of BCL-3

PROVIDER: E-GEOD-60551 | ExpressionAtlas | 2025-01-24

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-60551-analysis-methods.tsv	Tabular
	E-GEOD-60551-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-60551-configuration.xml	Xml
	E-GEOD-60551-percentile-ranks.tsv	Tabular
	E-GEOD-60551.condensed-sdrf.tsv	Tabular

Items per page:

1 - 5 of 57

Similar Datasets

Homo sapiens

Project description:HCT116 cells transcription array

| PRJNA486219 | ENA

Homo sapiens

Project description:HCT116 cells transcription array

| PRJNA486220 | ENA

The expression of microRNA Induced by HIV-1 Infection

Project description:To investigate whether and what miRNAs expression might be regulated by HIV-1 challenge, we analyzed the miRNA expression profile of MT4 cells inoculated with HIV-1-GFP for 48h using an array-based miRNA profiling and the infectivity was over 90% by analyzing with flow cytometer.

2022-01-05 | GSE161444 | GEO

Mus musculus

Project description:Mouse liver transcription profiling by array

| PRJNA238597 | ENA

Kidney on a Chip

Project description:<p>We generated primary cultures from mechanically isolated kidney glomeruli (filtration unit of the nephron) which are composed of podocytes and mesangial cells. In parallel, we generated primary kidney cortex tubule cell cultures, which are composed primarily of proximal tubule cells. Early passage cultures of these two cell types were subjected to chromatin accessibility profiling (DNase-Seq) and gene expression profiling (RNA-Seq). We found thousands of dynamically regulated enhancers in both cell types that potentially regulate nearby and distal target genes that are differentially expressed. These data will be useful for understanding the epigenomic regulation of gene transcription in key kidney cell types.</p>

| phs001720 | dbGaP

Mus musculus

Project description:Transcription profiling of mouse liver by array

| PRJNA240894 | ENA

Mus musculus

Project description:Transcriptional and epigenetic program changes of induced beta cells over time [expression array]

| PRJNA255422 | ENA

Genome-wide maps of H3K4me2/3 in prostate cancer cell line LNCaP

Project description:We report the high-throughput profiling of histone modifications in prostate cancer cells. By obtaining over 1 billion bases of sequence from chromatin immunoprecipitated DNA, we generated genome-wide chromatin-state maps of prostate cancer cells. we found androgen treatment dismisses a nucleosome over AR binding sites that are flanked by a pair of H3K4me2 marked nucleosomes. A novel quantitative model built on the behavior of such nucleosome pairs correctly identified regions bound by the regulators of the immediate androgen response including AR and FoxA1. More importantly this model also correctly predicted novel binding sites for other transcription factors present following prolonged androgen stimulation including Oct1 and NKX3.1. Thus quantitative modeling of enhancer structure provides a powerful predictive method to infer the identity of transcription factors involved in cellular responses to specific stimuli. Examination of 2 different histone modifications in prostate cancer cells with and without androgen (dihydrotestosterone, DHT) treatment.

2010-03-09 | E-GEOD-20042 | biostudies-arrayexpress

Homo sapiens

Project description:Illumina Bead expression array data from Human B cells treated with miR-29 over expression

| PRJNA392891 | ENA

Difference of GATA4 and beta-catenin pulldown chromatin immunoprecipitated DNA in HePG2i cells line with and without DOX induced GATA4 expression

Project description:We report the application of single-molecule-based sequencing technology for high-throughput profiling of HePG2i cell line with and without DOX induced GATA4 expression by obtaining over four billion bases of sequence from chromatin immunoprecipitated DNA.

2019-08-13 | GSE135714 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data