Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-66666

ABSTRACT: Transcriptome-wide analysis of gene expression in 4-day-old WT and athb1-1 mutant seedlings grown under short day conditions

PROVIDER: E-GEOD-66666 | ExpressionAtlas | 2019-05-14

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-66666-analysis-methods.tsv	Tabular
	E-GEOD-66666-analytics.tsv	Tabular
	E-GEOD-66666-analytics.tsv.undecorated	Tabular
	E-GEOD-66666-analytics.tsv.undecorated.unrounded	Tabular
	E-GEOD-66666-analytics.tsv.unrounded	Tabular

Items per page:

1 - 5 of 29

Similar Datasets

Arabidopsis thaliana

Project description:Transcriptome-wide analysis of gene expression in 4-day-old WT and athb1-1 mutant seedlings grown under short day conditions

| PRJNA277695 | ENA

Arabidopsis ult1-3 mutant restored LFYasEMF1's phenotype

2013-03-01 | GSE39947 | GEO

Arabidopsis ult1-3 mutant restored LFYasEMF1's phenotype

Project description:Arabidopsis ult1-3 mutant was shown to rescue the phenotype of LFYasEMF1 to that of WT. We performed microarray analysis of 7-d-old and 15-d-old seedlings of WT, LFYasEMF1, ult1-3 and LFYasEMF1/ult1-3 grown under short day to study the underlie mechanism of this phenotypic rescuing. Gene expression of 7 and 15 day old WT, LFYasEMF1, ult1-3 and LFYasEMF1/ult1-3 seedlings grown under short day condition were performed and compared.

2013-03-01 | E-GEOD-39947 | biostudies-arrayexpress

Hydrogen peroxide stress and Zat12 over-expression in Arabidopsis.

Project description:In this experiment we tested the transcriptome of transgenic Arabidopsis seedlings (5-day-old) constitutively expressing the zinc-finger protein Zat12 (At5g59820) under the control of the 35S-CaMV promoter (Zat12). The transcriptome of these seedlings was compared to that of wild type seedlings grown under the same conditions (WT) and to that of wild type seedlings grown under the same conditions and subjected to a hydrogen peroxide stress (WT+H2O2). Hydrogen peroxide treatment was performed by applying 20 mM hydrogen peroxide for 1 hour. In parallel to these experiments transgenic plants expressing Zat12 were subjected to a similar hydrogen peroxide stress (Zat12+H2O2). All treatments were performed with similar size and age seedlings grown in liquid culture (MS) and sampled at the same time as described by Davletova et al., 2005. Experimenter name = Ron Mittler Experimenter phone = 1-775-784-1384 Experimenter fax = 1-775-784-1650 Experimenter department = Dept. of Biochemistry Experimenter institute = University of Nevada Experimenter address = MS200 Experimenter address = Reno Experimenter address = Nevada Experimenter zip/postal_code = 89557 Experimenter country = USA Keywords: genetic_modification_design; stimulus_or_stress_design

2006-08-15 | GSE5530 | GEO

Cellulose synthase mutants

Project description:We compared the transcriptome of homozygous mutants for AtCesA4 and AtCesA6 (cellulose synthase genes) to their heterozygous counterparts that have a wild type phenotype. All plants were 4-weeks-old and grown under short day conditions.

2010-04-19 | GSE20221 | GEO

IBMCP JLeon lab NO-exposed (15, 30 and 60 min after pulse of 300 ppm NO during 5 min) wt Col-0 versus untreated wt Col -0

Project description:Compared analysis of the transcriptomes of 12-day old seedlings from wild type Col-0 treated with NO for 15, 30 and 60 min vs untreated control seedlings. Samples were harvested 12 h after dawn of day 12 after sowing and seedlings were grown under long days (16 h light / 8 h darkness) photoperiodic conditions.

2015-12-01 | GSE75509 | GEO

Transcriptome-wide analysis of gene expression in 4-day-old WT and athb1-1 mutant seedlings grown under short day conditions

Project description:To understand which genes acts downstream AtHB1 affecting hypocotyl growth in Arabidopsis thaliana, we performed transcriptional profiles of 4-day-old seedlings grown in a short-day regime comparing wild-type with athb1-1 mutant plants. These results show that some of the AtHB1-regulated genes modulate cell elongation, particularly cell wall composition and elongation, or encode proteins that serve as a source of carbon, nitrogen, and sulfur for early seedling growth. RNA-Seq data for 4-day-old wild-type (Col-0) and athb1-1 mutant seedlings grown under short-day conditions. Biological triplicates were performed for each genotype analyzed.

2015-04-01 | E-GEOD-66666 | biostudies-arrayexpress

Clock-controlled diurnal gene expression changes on a genome-wide scale

Project description:au14-07_clock - llhh clock transcriptome - Correlate clock-controlled diurnal gene expression changes with H2Bub chromatin mark changes on a genome-wide scale. - Wild type seedlings(Col-0)have been grown under Light/Dark conditions(12 h Light:12 h Dark)and thermocycles(23°C day:19°C night).After 10 days of entrainment, the conditions were switched to continuous light and temperature (LLHH) for 2 days. Seedlings have been harvested the 2nd day after the switch at Zeitgeber time 24 and 36 that correspond to dawn and dusk, respectively. llhh clock transcriptome-LLHH clock transcriptome.

2017-02-01 | GSE93340 | GEO

Proteome data of HID2 negatively regulates drought tolerance in Arabidopsis thaliana

Project description:To further investigate how HID2 regulates translation during drought responses, we performed a comparative leaf proteome analysis using 24-day-old hid2 mutant and WT plants grown under well-watered and drought stress conditions.

2025-07-22 | PXD066370 |

Arabidopsis thaliana

Project description:Expression data from 2-week-old Arabidopsis untreated seedlings grown under a short day condition

| PRJNA118923 | ENA