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E-GEOD-7353

ABSTRACT: Transcription profiling by array of Arabidopsis mutant for gid1a, gid1b and gid1c or for ga-1 after treatment with Gibberellin (GA3)

OTHER RELATED OMICS DATASETS IN: PRJNA100421

PROVIDER: E-GEOD-7353 | ExpressionAtlas | 2014-07-04

REPOSITORIES: ExpressionAtlas

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Dataset's files

Source:

			Action	DRS
	E-GEOD-7353-analysis-methods.tsv	Tabular
	E-GEOD-7353-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-7353-configuration.xml	Xml
	E-GEOD-7353-configuration.xml.beforeQC	Xml
	E-GEOD-7353-percentile-ranks.tsv	Tabular

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Early GA response genes in Arabidopsis thaliana

2007-03-24 | GSE7353 | GEO

Transcription profiling of Arabidopsis thaliana early response to the phytohormone Gibberellin (GA)

Project description:The phytohormone GA controls multiple important developmental processes in plants such as germination, elongation growth and flowering time. In this experiment, we look for early GA response genes in 7 day-old light-grown Arabidopsis seedlings. To this end we compare four data sets: (1) a GA biosynthesis mutant ga-1 (SALK_109115) mock treated for 1 hr; (2) a GA biosynthesis mutant ga-1 (SALK_109115) treated for 1 hr with 100 ÂµM GA3; (3) a gid1a-1 gid1b-1 gid1c-2 GA receptor triple mutant mock treated for 1 hr; (4) a gid1a-1 gid1b-1 gid1c-2 GA receptor triple mutant treated for 1 hr with 100 ÂµM GA3. In a comparison of the two ga-1 samples, GA regulated genes can be identified, and the assumption is that bona fide GA regulated genes are not responding in the gid1a-1 gid1b-1 gid1c-2 GA receptor mutant. Experiment Overall Design: We compare four samples of 7 day-old light-grown growth-medium grown seedlings (3 independent biological replicates each): (1) a GA biosynthesis mutant ga-1 (SALK_109115) mock treated for 1 hr; (2) a GA biosynthesis mutant ga-1 (SALK_109115) treated for 1 hr with 100 ÂµM GA3; (3) a gid1a-1 gid1b-1 gid1c-2 GA receptor triple mutant mock treated for 1 hr; (4) a gid1a-1 gid1b-1 gid1c-2 GA receptor triple mutant treated for 1 hr with 100 ÂµM GA3. In a comparison of the two ga-1 samples, GA regulated genes can be identified, and the assumption is that bona fide GA regulated genes are not responding in the gid1a-1 gid1b-1 gid1c-2 GA receptor mutant.

2008-06-15 | E-GEOD-7353 | biostudies-arrayexpress

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