Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-MEXP-2010

ABSTRACT: Transcription profiling by array of human colon cancer cells after treatment with docosahexaenoic acid

PROVIDER: E-MEXP-2010 | ExpressionAtlas | 2025-01-22

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-MEXP-2010-analysis-methods.tsv	Tabular
	E-MEXP-2010-atlasExperimentSummary.Rdata	Rdata
	E-MEXP-2010-configuration.xml	Xml
	E-MEXP-2010-percentile-ranks.tsv	Tabular
	E-MEXP-2010.condensed-sdrf.tsv	Tabular

Items per page:

1 - 5 of 66

Similar Datasets

Mass spectrometry data of colon cancer cell SW480 treated with Caffeic acid phenyl ethyl

Project description:Caffeic acid acetophenate exhibits anti-tumor activity. We employed proteomics to investigate the targets of caffeic acid acetophenate in human colon cancer cells. The experimental group consisted of SW480 human colon cancer cells treated with 10μM caffeic acid phenethyl for 24 hours, while the control group was treated with an equivalent volume of DMSO. Non-standard quantitative mass spectrometry was utilized to analyze differentially expressed proteins between the two groups and identify the specific target of caffeic acid acetophenate on colon cancer cells.

2023-11-01 | PXD046600 |

Improvement of antiproliferative activity of betulinic acid by fluorine substitution

Project description:Gene expression profiling of betulinic acid and fluorinated betulinic acid-treated MCF-7 human breast cancer cells. We used Phalanx Biotech Human Whole Genome OneArray HOA6.2 Array to determine differential gene expression.

2017-03-03 | GSE90104 | GEO

Proteomic characterization of transcription and splicing factors associated with a more invasive phenotype in colorectal cancer

Project description:To find new transcription and splicing factors associated with the metastatic phenotype we used a concatenated tandem array of consensus transcription factors response elements (catTFRE) on nuclear extracts of colon cancer cell lines. We used two different isogenic pairs of colorectal metastatic cells, KM12SM/KM12C and SW620/480. Proteins were pulled-down using biotinylated DNA sequences and streptavidin beads and analyzed by LC-MSMS.

2017-11-15 | PXD006662 | Pride

E-MEXP-2590

Project description:Transcription profiling by array of human colon cancer cell line SW620 after treatment with tetradecylthioacetic acid

2025-01-22 | E-MEXP-2590 | ExpressionAtlas

Global mRNA expression profiling of HCT116 cells overexpressing miR30a-5p

Project description:Global mRNA expression profiling of HCT116 cells overexpressing miR30a-5p were collected using Agilent human whole genome array (G4845A AMADID 026652, cRNA 4x44k V2) . Two different sources of RNA were analyzed: 1.) HCT116 colon cancer cells overexpressing human mir-30a-5p together with a sponge vector expressing binding sites for the antisense sequence of sh30a-5p vector construct to compete out possible miRNAs derived from the anti-guide strand of this vector. 2.) HCT116 colon cancer cells expressing control vector (pLKO.1-LV) and the sponge vector described above.

2012-03-08 | GSE29921 | GEO

Alphanudivirus tertidromelanogasteris

Project description:LpEVs treatment of colon cancer cells

| PRJNA943340 | ENA

Modulation of gene expression induced by supercritical fluid rosemary extract in colon cancer cells

Project description:Supercritical rosemary extract (containing 16.90% carnosic acid, 1.90% carnosol and 13.59% volatile compounds) showed antitumor activity on colon cancer cells in vitro. We treated colon cancer cells with the extract and we employed whole genome microarray expression profiling to identify genes potentially involved in its antitumor mechanism of action.

2014-04-04 | GSE56496 | GEO

Genome-wide lncRNA Expression Profiling in colon cancer patients.

Project description:Transcriptional lncRNAs expression comparing human colon cancer tissues to normal colon tissues using Agilent-062918 Human lncRNA array V4.0.

2020-03-30 | GSE97300 | GEO

Transcription profiling by array of human colon cancer stem cells derived from human colon cancer line cell, SW480

Project description:Cancer stem-like cells are defined as small population of cancer cells which has, higher tumor-initiating ability, self-renewing ability and differentiation ability. In this experiment, transcription profile of cancer stem-like cells derived from human colon cancer line cell SW480 was investigated. Cancer stem-like cells were isolated as side population (SP) cells by Hoechst33342 dye staining from human colon cancer line cell SW480. Non-cancer stem-like cells were isolated as main population (MP) cells. RNAs were isolated from SP cells and MP cells derived from SW480 cells and array experiment was perfromed in dye swaped fashion.

2015-05-31 | E-MTAB-2605 | biostudies-arrayexpress

Transcription profiling of human colon cancer patients reveals a gene expression profile which predicts recurrence and death

Project description:Functional genomics approach to metastatic colon cancer; Mouse model translated to human colon cancer Experiment Overall Design: Gene expression array differences between highly invasive mouse colon cancer cells and non-invasive colon cancer cells

2009-12-05 | E-GEOD-19073 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data