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Salt stress in salt sensitive Oryza sativa Indica group Pokkali (salt sensitive)

ABSTRACT: Oryza sativa Indica group Pokkali (salt sensitive) seedlings were subjected to salt stress or control conditions and sampled at five time points over the course of 4 hours. RNA samples extracted were assayed using the Illumina HiSeq 2000 platform.

REANALYSIS of: E-MTAB-1914

PROVIDER: E-MTAB-1914 | ExpressionAtlas | 2019-01-09

REPOSITORIES: ExpressionAtlas

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Salt stress in salt sensitive Oryza sativa Indica group Pokkali (salt sensitive)

Project description:Oryza sativa Indica group Pokkali (salt sensitive) seedlings were subjected to salt stress or control conditions and sampled at five time points over the course of 4 hours. RNA samples extracted were assayed using the Illumina HiSeq 2000 platform.

2020-01-01 | E-MTAB-1914 | ArrayExpress

Salt stress in salt sensitive Oryza sativa Indica group IR29

Project description:Oryza sativa Indica group IR29 (salt sensitive) seedlings were subjected to salt stress or control conditions and sampled at five time points over the course of 24 hours. RNA samples extracted were assayed using the Illumina HiSeq 2000 platform.

2017-10-02 | E-MTAB-1913 | ArrayExpress

Salt stress in salt sensitive Oryza sativa Indica group IR29

2019-01-09 | E-MTAB-1913 | ExpressionAtlas

RNA-seq of coding RNA in rice (Oryza sativa L. Japonica nipponbare) under salt stress over a time-course, Gramene project

Project description:Oryza sativa L. Japonica nipponbare seedlings were treated with 300mM NaCl or water, and then samples were taken after one hour, five hours and 24 hours, to assess which genes are differentially expressed over time during salt stress treatment. The results from this dataset are also compared with those from the same samples assayed using RNA-seq.

2015-08-25 | E-MTAB-1625 | ArrayExpress

Transcription profiling by array of rice (Oryza sativa L. Japonica Nipponbare) under salt stress over a time course, Gramene project

2015-12-04 | E-MTAB-1624 | ArrayExpress

RNA-seq of coding RNA in rice (Oryza sativa L. Japonica nipponbare) under salt stress over a time-course, Gramene project

2019-01-10 | E-MTAB-1625 | ExpressionAtlas

Salt stress in salt sensitive Oryza sativa Indica group Pokkali (salt sensitive)

| E-MTAB-1914 | BioStudies

Salt stress in salt sensitive Oryza sativa Indica group IR29

| E-MTAB-1913 | BioStudies

Transcription profiling by array of rice (Oryza sativa L. Japonica Nipponbare) under salt stress over a time course, Gramene project

2014-07-03 | E-MTAB-1624 | ExpressionAtlas

Transcription profiling of indica rice cultivar FR13A under salt stress condition.

Project description:A submergence tolerant indica rice cultivar FR13A, was also reported to withstand salt stress and proven in our experiments. The mechanism of tolerance is yet to be studied by forward genetics approach. However, it is known that salt stress tolerance is governed by several QTLs and not by a single gene. To understand the mechanism of such a complex mechanism of salt tolerance we selected, two indica rice genotypes namely, I) FR13A, a tolerant indica variety and ii) IR24, a susceptible genotype for this study. We used the 22K rice Oligoarray from Agilent technologies to study the transcript profile in the leaves of the two contrasting rice genotypes under constitutive and salt stress conditions at seedling stage. Experiment Overall Design: We used Agilent rice gene chips (G4138A) to investigate the transcript level changes in rice plant tissues during salt stress treatment. We used two contrasting rice genotypes (FR13A tolerant and IR24 susceptible) differing in salt stress response. Plants were grown in growth chambers and treated with 150 mM salt concentration at 14th DAS. Sampling was done in both constitutive and treated plants at 3 time points. Two replications of microarray experiments were carried out by hybridizing the RNA from tolerant samples against the susceptible lines on the same slide.

2008-06-15 | E-GEOD-6600 | ArrayExpress

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