Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-MTAB-2588

ABSTRACT: DEK1 deletion effect on Physcomitrella patens transcriptome

PROVIDER: E-MTAB-2588 | ExpressionAtlas | 2019-05-14

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-MTAB-2588-analysis-methods.tsv	Tabular
	E-MTAB-2588-analytics.tsv	Tabular
	E-MTAB-2588-analytics.tsv.undecorated	Tabular
	E-MTAB-2588-analytics.tsv.undecorated.unrounded	Tabular
	E-MTAB-2588-analytics.tsv.unrounded	Tabular

Items per page:

1 - 5 of 407

Similar Datasets

[E-MTAB-599] Mouse Transcriptome

Project description:Sequencing the transcriptome of DBAxC57BL/6J mice. To study the regulation of transcription, splicing and RNA turnover we have sequenced the transcriptomes of tissues collected DBAxC57BL/6J mice. We strongly encourage researchers to contact us if there is any queries about referencing or publishing analysis based on pre-publication data. This data is part of a pre-publication release. For information on use of the data and the data release policy please see: http://www.sanger.ac.uk/resources/mouse/genomes/datarelease.html ArrayExpress Release Date: 2011-04-09 Publication Title: Sequence variation amongst 17 classical and wild-derived mouse genomes and its effect on gene regulation and phenotypic variation. Publication Author List: Thomas M. Keane, Petr Daneck, Leo Goodstadt, Bret Payseur, Michael White, Kim Wong, Binnaz Yalcin, Andreas Heger, Avi Agam, Guy Slater, Martin Goodson, Nick Furotte, Eleazar Eskin, Christoffer Nellaker, Helen Whitley, James Cleak, Deborah Janowitz, Polinka Hernandez-Pliego, Amartjit Bhomra, Jerome Nicod, Xiangchao Gan, Wei Yuan, Louise van der Weyden, Sendu Bala, Allan Bradley, Jim Stalker, Richard Mott, Richard Durbin, Ian Jackson, Laura Reinholdt, Chris P. Ponting, Ewan Birney, Jonathan Flint, David J. Adams Person Roles: submitter Person Last Name: Service Person First Name: Submission Person Mid Initials: Person Email: datahose@sanger.ac.uk Person Phone: Person Address: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom Person Affiliation: Wellcome Trust Sanger Institute Person Roles: project owner Person Last Name: Adams Person First Name: David Person Mid Initials: Person Email: da1@sanger.ac.uk Person Phone: Person Address: The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, United Kingdom Person Affiliation: Wellcome Trust Sanger Institute

2011-07-14 | GSE30617 | GEO

Salmonella enterica

Project description:Effect of hfq-deletion on Salmonella transcriptome

| PRJNA102449 | ENA

DEK1 deletion effect on Physcomitrella patens transcriptome

Project description:DEK1 deletion effect on Physcomitrella patens transcriptome

| PRJEB6339 | ENA

Transcriptional profiling of Pseudomonas aeruginosa PAO1 strain and its delta pppA-ppkA mutant growing under non-stress conditions and conditions of oxidative stress.

Project description:Effect of deletion of pppA and ppkA genes in Pseudomonas aeruginosa on global transcriptome of mutant strain and effect of this deletion on response to oxidative stress.

2012-01-01 | E-MEXP-3117 | biostudies-arrayexpress

Processed data related to "Gene expression profile of NAFLD murine models" (Part1: E-MTAB-12808, Part2: E-MTAB-12817)

Project description: Not available

| S-BSST1361 | biostudies-other

Cell-to-cell heterogeneity of phosphate gene expression in yeast is controlled by alternative transcription, 14-3-3 and Spl2

Project description:We investigated the effect of deletion of BMH1, SPL2 and RRP6 on gene expression in the yeast Saccharomyces cerevisiae. In addition, the effect of 60 min phosphate starvation was studied in the SPL2 deletion mutant as well as in the parental strain BY4741. Finally, the effect of deletion of specific parts of the SPL2 promoter was investigated. Transcriptome analysis was performed by strand-specific RNAseq.

2021-08-29 | GSE135911 | GEO

Iwr1 directs RNA polymerase II nuclear import

Project description:Effect of the deletion of IWR1 (YDL115c) on the Saccharomyces cerevisiae transcriptome

2011-03-23 | E-MEXP-3126 | biostudies-arrayexpress

Sinorhizobium meliloti 1021 delta divJ

Project description:Effect of deletion of DivJ kinase on the transcriptome of Sinorhizobium meliloti 1021.

2013-07-29 | E-MEXP-3942 | biostudies-arrayexpress

[E-MTAB-587] PCR_artifacts

Project description:WARNING: This library was yield low amount of material and it was over-amplified by PCR. This libraries are used study the robustness of several statitical methods against PCR artifacts. ChIP experiments were performed on Arabidopsis wildtype inflorescences using an antibody raised against a C-terminal peptide of SEP3. ArrayExpress Release Date: 2011-04-27 Publication Title: ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions Publication Author List: Jose M. Muino, Kerstin Kaufmann, Roeland C. H. J. van Ham, Gerco C. Angenent, and Pawel Krajewski Person Roles: submitter Person Last Name: Muino Person First Name: Jose Person Mid Initials: M. Person Email: jose.muino@wur.nl Person Phone: 0317-481122 Person Address: Droevendaalsesteeg 1, P.O. Box 16, 6700 AA Wageningen, The Netherlands Person Affiliation: Plant Research International B.V.

2011-07-14 | GSE30616 | GEO

Postnatal neuronal Bace1 deletion impairs neuroblast and oligodendrocyte maturation

Project description:We aim to understand the effect of postnatal neuronal deletion of Bace1 on the transcriptome of the hippocampus

2023-01-01 | GSE217960 | GEO