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E-MTAB-4789

ABSTRACT: Transcription profiling by high throughput sequencing of tomato Rio Grande prf3 leaves challenged with either the flgII-28 peptide or different bacterial strains

PROVIDER: E-MTAB-4789 | ExpressionAtlas | 2019-05-14

REPOSITORIES: ExpressionAtlas

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			Action	DRS
	E-MTAB-4789-analysis-methods.tsv	Tabular
	E-MTAB-4789-analytics.tsv	Tabular
	E-MTAB-4789-analytics.tsv.undecorated	Tabular
	E-MTAB-4789-analytics.tsv.undecorated.unrounded	Tabular
	E-MTAB-4789-analytics.tsv.unrounded	Tabular

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E-MTAB-4797
E-MTAB-4796

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Project description:To characterize the PTI response of tomato and the effect of the delivery of a subset of effectors, we performed an RNA-seq analysis of tomato Rio Grande prf3 leaves challenged with either the flgII-28 peptide or the following bacterial strains: Agrobacterium tumefaciens GV2260, Pseudomonas fluorescens 55, Pseudomonas putida KT2440, Pseudomonas syringae pv. tomato (Pst) DC3000, Pst DC3000 deltahrcQ-U deltafliC and Pst DC3000 deltaavrPto deltaavrPtoB. NOTE: Samples in SRA were assigned the same sample accession. This is incorrect as there are different samples, hence âSource Nameâ was replaced with new values. Comment[ENA_SAMPLE] contains the original SRA sample accessions.

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