Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-MTAB-8215

ABSTRACT: mRNA-seq of SW837 USP22 knockdown cells

PROVIDER: E-MTAB-8215 | ExpressionAtlas | 2025-01-16

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-MTAB-8215-analysis-methods.tsv	Tabular
	E-MTAB-8215-analytics.tsv	Tabular
	E-MTAB-8215-atlasExperimentSummary.Rdata	Rdata
	E-MTAB-8215-configuration.xml	Xml
	E-MTAB-8215-g1_g2-mvaPlot.png	Other

Items per page:

1 - 5 of 22

Similar Datasets

Re-analysis of E-MTAB-1585

Project description:Raw data from E-MTAB-1585 was normalized by using reads per million. https://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1585/ Strand specific RNA-Seq data E-MTAB-1585 was normalized and subtracted control from knockdown to generate tracks that more clearly displayed the unusual pattern of RNA expression caused by knockdown of 7SK. The following wig files were generated from multiple samples (i.e.raw data files), as indicated in the 'readme.txt' file. 7sk_3p_KD_norm.wig: 7SK 3P Knockdown normalized 7sk_3p_KDF_norm.wig: 7SK 3P Knockdown normalized (Forward) 7sk_3p_KDR_norm.wig: 7SK 3P Knockdown normalized (Reverse) 7sk_5p_KD_norm.wig: 7SK 5P Knockdown normalized 7sk_5p_KDF_norm.wig: 7SK 5P Knockdown normalized (Forward) 7sk_5p_KDR_norm.wig: 7SK 5P Knockdown normalized (Reverse) 7sk_Control_norm.wig: 7SK Control normalized 7sk_ControlF_norm.wig: 7SK Control normalized (Forward) 7sk_ControlR_norm.wig: 7SK Control normalized (Reverse) 7sk_3p_KDF-ControlF.wig: 7SK 3P Knockdown-Control (Forward) 7sk_3p_KDR-ControlR.wig: 7SK 3P Knockdown-Control (Reverse) 7sk_5p_KDF-ControlF.wig: 7SK 5P Knockdown-Control (Forward) 7sk_5p_KDR-ControlR.wig: 7SK 5P Knockdown-Control (Reverse)

2013-09-19 | E-GEOD-50860 | biostudies-arrayexpress

mRNA-seq of HCT116 USP22 knockdown cells

Project description:mRNA-seq of HCT116 USP22 knockdown cells

| PRJEB29794 | ENA

mRNA-seq of MCF10A USP22 knockdown cells

Project description:mRNA-seq of MCF10A USP22 knockdown cells

| PRJEB34009 | ENA

mRNA-seq of SW837 USP22 knockdown cells

Project description:mRNA-seq of SW837 USP22 knockdown cells

| PRJEB33860 | ENA

mRNA-seq of SW480 USP22 knockdown cells

Project description:mRNA-seq of SW480 USP22 knockdown cells

| PRJEB33859 | ENA

mRNA-seq for etoposide-treated TLP-knockdown cells

Project description:mRNA-seq for etoposide-treated TLP-knockdown cells

| PRJNA494328 | ENA

mRNA-seq for HCT116 Parental and ARID1A knockdown cells, mRNA-seq for DLD1 Parental, ARID1A knockdown and ARID1A knockout cells, mRNA-seq for COLO320DM Parental and ARID1A knockdown and ARID1A knockout cells

Project description:mRNA-seq for HCT116 Parental and ARID1A knockdown cells, mRNA-seq for DLD1 Parental, ARID1A knockdown and ARID1A knockout cells, mRNA-seq for COLO320DM Parental and ARID1A knockdown and ARID1A knockout cells

| PRJEB31771 | ENA

E-MTAB-7393

Project description:mRNA-seq of HCT116 USP22 knockdown cells

2025-01-23 | E-MTAB-7393 | ExpressionAtlas

E-MTAB-8247

Project description:mRNA-seq of MCF10A USP22 knockdown cells

2025-01-16 | E-MTAB-8247 | ExpressionAtlas

E-MTAB-8214

Project description:mRNA-seq of SW480 USP22 knockdown cells

2025-01-16 | E-MTAB-8214 | ExpressionAtlas