3D gene expression atlas of WUSCHEL in Arabidopsis ovules with cellular, nuclear and tissue resolution.

ABSTRACT: Here we present a canonical 3D digital atlas of Arabidopsis ovules expressing a WUSCHEL reporter (pWUS::2xVENUS:NLS::tWUS). The dataset consists of 69 3D digital ovules covering stages 1-I to 2-III. The database is organized according to the individual ovule identity code used in the study. Each dataset contains the 3D z-stack and the associated 3D mesh file. The dataset includes raw cell boundaries from confocal microscopy, neural network based cell boundary predictions from PlantSeg (https://github.com/hci-unihd/plant-seg), nuclei stack, 3D segmented cells from the boundary predictions as well as the annotated 3D cell meshes and the associated attribute files in csv format. The WUSCHEL reporter and the associated blob mesh is also available as a resource. The 3D cell mesh and blob mesh f

ORGANISM(S): Arabidopsis thaliana (thale cress)

SUBMITTER: Kay Schneitz 

PROVIDER: S-BSST498 | bioimages |

REPOSITORIES: bioimages