Dataset Information

Smallbone2011_TrehaloseBiosynthesis

ABSTRACT: This model is from the article: Building a Kinetic Model of Trehalose Biosynthesis in Saccharomyces cerevisiae. Smallbone K, Malys N, Messiha HL, Wishart JA, Simeonidis E. Methods Enzymol. 2011;500:355-70. 21943906 , Abstract: In this chapter, we describe the steps needed to create a kinetic model of a metabolic pathway based on kinetic data from experimental measurements and literature review. Our methodology is presented by utilizing the example of trehalose metabolism in yeast. The biology of the trehalose cycle is briefly reviewed and discussed. This SBML model is made available under the Creative Commons Attribution-Share Alike 3.0 Unported Licence (see www.creativecommons.org ). This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2012 The BioModels.net Team. For more information see the terms of use . To cite BioModels Database, please use: Li C, Donizelli M, Rodriguez N, Dharuri H, Endler L, Chelliah V, Li L, He E, Henry A, Stefan MI, Snoep JL, Hucka M, Le Novère N, Laibe C (2010) BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst Biol., 4:92.

SUBMITTER: Kieran Smallbone

PROVIDER: BIOMD0000000380 | BioModels | 2024-09-02

REPOSITORIES: BioModels

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			Action	DRS
	BIOMD0000000380?filename=BIOMD0000000380-biopax2.owl	Owl
	BIOMD0000000380?filename=BIOMD0000000380-biopax3.owl	Owl
	BIOMD0000000380?filename=BIOMD0000000380-matlab.m	Other
	BIOMD0000000380?filename=BIOMD0000000380-octave.m	Other
	BIOMD0000000380?filename=BIOMD0000000380.m	Other

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Publications

Building a kinetic model of trehalose biosynthesis in Saccharomyces cerevisiae.

Smallbone Kieran K Malys Naglis N Messiha Hanan L HL Wishart Jill A JA Simeonidis Evangelos E

Methods in enzymology 20110101

In this chapter, we describe the steps needed to create a kinetic model of a metabolic pathway based on kinetic data from experimental measurements and literature review. Our methodology is presented by utilizing the example of trehalose metabolism in yeast. The biology of the trehalose cycle is briefly reviewed and discussed. ...[more]

PMID: 21943906

Publication: 1/3

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