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Dias2019 - GSM model of S. pneumoniae R6


ABSTRACT: Phenotypically Reconciled Genome-scale Metabolic Model for the Metabolism of Streptococcus pneumoniae Strain R6.

SUBMITTER: Oscar Manuel Lima Dias  

PROVIDER: MODEL2205020001 | BioModels | 2023-11-27

REPOSITORIES: BioModels

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Publications

iDS372, a Phenotypically Reconciled Model for the Metabolism of <i>Streptococcus pneumoniae</i> Strain R6.

Dias Oscar O   Saraiva João J   Faria Cristiana C   Ramirez Mario M   Pinto Francisco F   Rocha Isabel I  

Frontiers in microbiology 20190625


A high-quality GSM model for <i>Streptococcus pneumoniae</i> R6 model strain (iDS372), comprising 372 genes and 529 reactions, was developed. The construction of this model involved performing a genome-wide reannotation to identify the metabolic capacity of the bacterium. A reaction representing the abstraction of the biomass composition was reconciled from several studies reported in the literature and previous models, and included in the model. The final model comprises two compartments and ma  ...[more]

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