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Neiburga2022 - Arabidopsis thaliana MEP pathway with isoprene synthesis

ABSTRACT: Kinetic model of extended MEP pathway in Arabidopsis thaliana for isoprene. This model was used for determining total optimization potential (TOP) of isoprene production in Arabidopsis thaliana using Spacescanner (https://github.com/atiselsts/spacescanner). This model was used to make designs D, E and F. An optimization task in COPASI can be perfomed using this model by accesing COPASI/Tasks/Optimization. Parameters which will be changed during the optimization and the optimization constraints can be selected. More description in Total optimization potential (TOP) approach based constrained design of isoprene and cis-abienol production in A. thaliana, Authors: Katrina D. Neiburga, Reinis Muiznieks, Darta M. Zake, Agris Pentjuss, Vitalijs Komasilovs, Johann Rohwer, Alain Tissier, Egils Stalidzans

SUBMITTER: Reinis Muiznieks

PROVIDER: MODEL2206090003 | BioModels | 2023-02-04

REPOSITORIES: BioModels

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Neiburga2022 - Arabidopsis thaliana MEP pathway with cis-abienol synthesis

Project description:Kinetic model of extended MEP pathway in Arabidopsis thaliana for cis-abienol production. This model was used for determining total optimization potential (TOP) of cis-abienol production in Arabidopsis thaliana using Spacescanner (https://github.com/atiselsts/spacescanner). This model was used to make designs A, B and C. An optimization task in COPASI can be perfomed using this model by accesing COPASI/Tasks/Optimization. Parameters which will be changed during the optimization and the optimization constraints can be selected. More description in Total optimization potential (TOP) approach based constrained design of isoprene and cis-abienol production in A. thaliana, Authors: Katrina D. Neiburga, Reinis Muiznieks, Darta M. Zake, Agris Pentjuss, Vitalijs Komasilovs, Johann Rohwer, Alain Tissier, Egils Stalidzans

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Neiburga2022 - Arabidopsis thaliana wild-type MEP pathway kinetic model

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2023-02-04 | MODEL2206090001 | BioModels

Berzins2022 - Crypthecodinium cohnii: ethanol uptake for production of DHA precursor acetyl-CoA

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2022-05-06 | MODEL2112290001 | BioModels

Berzins2022 - Crypthecodinium cohnii: glucose and glycerol uptake for production of DHA precursor acetyl-CoA

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2022-05-06 | MODEL2112280001 | BioModels

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2019-09-03 | PXD012821 | Pride

Agilent data from Arabidopsis thaliana enriched guard cell tissue and leafs.

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2013-01-14 | GSE41054 | GEO

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2018-11-14 | ST001096 | MetabolomicsWorkbench

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2013-06-04 | GSE38639 | GEO

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2012-06-11 | PRD000717 | Pride

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