Browse
Submit Data
Databases
API
Help

Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

14 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcription profiling of flowers from Arabidopsis Col-4 plants

ABSTRACT: As part of the CAGE consortium, fully opened flowers from Arabidopsis thaliana Col-4 plants at the developmental stage 6.50 (Boyes stage) were hybridized against the oligo reference labeled with Cy3. The flower samples in addition to the leaf, whole shoot, and roots samples from other CAGE members provide a basal/normal genomic expression pattern for the Col-4 wildtype plants.

ORGANISM(S): Arabidopsis thaliana

SUBMITTER: Dawn Little

PROVIDER: E-CAGE-44 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

ACCESS DATA

Json Xml

Similar Datasets

Transcription profiling of shoots from Arabidopsis nonexpresseor of PR genes 1 (npr1-1) mutants

Project description:As part of the Cage consortium, all leaves (the shoot) of Col-4 plants were harvested at the 1.12 stage of development as defined by Boyes scale. These samples were hybridized against the oligo reference labeled with Cy3. These samples can be compared to the Col-WT samples that were harvested by the CAGE members to provide a variation of a normal genomic expression pattern.

2006-10-31 | E-CAGE-53 | biostudies-arrayexpress

Transcription profiling of shoots from Enhanced Disease Susceptibility 8 mutant Arabidopsis plants

Project description:As part of the Cage consortium, all leaves (the shoot) of eds8 plants were harvested at the 1.12 stage of development as defined by Boyes scale . These samples were hybridized against the oligo reference labeled with Cy3. These samples can be compared to the Col-WT samples that were harvested by the CAGE members to provide a variation of a normal genomic expression pattern.

2006-06-01 | E-CAGE-57 | biostudies-arrayexpress

Transcription profiling of leaves 1 and 2 from Enhanced Disease Susceptibility 8 mutant Arabidopsis plants at different stages of development

Project description:As part of the Cage consortium, leaves 1 and 2 of eds8 plants were harvested at differents stages of development as defined by Boyes scale (1.04, 1.12, and 5.10). These samples were hybridized against the oligo reference labeled with Cy3. These samples can be compared to the Col-WT samples that were harvested by the CAGE members to provide a variation of a normal genomic expression pattern.

2006-10-31 | E-CAGE-58 | biostudies-arrayexpress

Transcription profiling of leaves 1 and 2 from Arabidopsis Col-4 plants

Project description:As part of the CAGE consortium, Col-4 plants (1.04, 1.08, 1.12 or 5.10 stage) were exposed to a methyl jasmonate stimulus (or to the ethanol as a control) and leaves 1 and 2 were harvested. Hybridizations were performed using the oligo reference labeled with Cy3. The stress samples can be analyzed together with the basal/normal genomic expression patterns for Col-4 wildtype plants collectively produced by CAGE members.

2006-10-31 | E-CAGE-52 | biostudies-arrayexpress

Transcription profiling of Arabidopsis Col-4 plants leaves 1 and 2 after drought treatment

Project description:As part of the CAGE consortium, the rosettes of Col-4 samples (1.12 or 5.10 stage) were dried to 60% of their original mass and leaves 1 and 2 were harvested. Control plants were used to extrapolate the mass proportion of leaves 1+2 to the rest of the rosette and those leaves (1&2) were harvested. Hybridizations were performed using the oligo reference labeled with Cy3. The stress samples can be analyzed together with the basal/normal genomic expression patterns for Col-4 wildtype plants collectively produced by CAGE members.

2006-10-31 | E-CAGE-54 | biostudies-arrayexpress

Transcription profiling of Arabidopsis Col-4 plants exposed to methyl jasmonate

2006-10-31 | E-CAGE-51 | biostudies-arrayexpress

Transcription profiling of Arabidopsis local and distal leaves in response to eggs of the Pieris rapae butterfly

Project description:Expression profiling of the effect of eggs of the Pieris rapae butterfly on Arabidopsis thaliana local leaf vs. distal leaf using 5mm leaf disk

2007-04-04 | E-CAGE-189 | biostudies-arrayexpress

Transcription profiling of shoots of coi1 Arabidopsis plants

Project description:As part of the Cage consortium, all leaves (the shoot) of coi1 plants were harvested at the 1.10 stage of development as defined by Boyes scale. The Col-0 was used as a control for the coi1-1 plants as both sets were sown on MS media for 7 days and then transferred to soil (Jiffy pots). These samples were hybridized against the oligo reference labeled with Cy3. These samples can be compared to the Col-WT samples that were harvested by the CAGE members to provide a variation of a normal genomic expression pattern.

2006-10-31 | E-CAGE-59 | biostudies-arrayexpress

Transcription profiling of Arabidopsis Col-0 plants leaves 1 and 2

Project description:As part of the Cage consortium, leaves 1 and 2 of Col-0 plants were harvested at differents stages of development as defined by Boyes Scale (1.04, 1.12, and 5.10). The Col-0 was used as a control for the coi1-1 plants as both sets were sown on MS media for 7 days and then transferred to soil (Jiffy pots). These samples were hybridized against the oligo reference labeled with Cy3. These samples can be compared to the Col-WT samples that were harvested by the CAGE members to provide a variation of a normal genomic expression pattern.

2006-10-31 | E-CAGE-56 | biostudies-arrayexpress

Transcription profiling of Arabidopsis local and distal leaves in response to eggs of the Pieris rapae butterfly using leaf disks the size of the egg batch

Project description:Expression profiling of the affect of eggs of the Pieris brassicae butterfly on Arabidopsis thaliana local leaf vs. the distal leaf using leaf disks the size of the egg batch.

2007-04-04 | E-CAGE-190 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data