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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Gene Expression Kinetics

ABSTRACT: We have taken five different time points of a Yeast culture in exponential grow in rich medium, each one elapsed ten minutes from de previous one (from OD600 0.36 to 0.47). Then, for each time point we have measured the transcription rates (TR) and mRNA amounts (RA) for all the genes using the Genomic run-on (GRO) technique . For each time point we have measured the transcription rates (GRO) with 3 replicates (except for the t2 that only has 2 replicates due to technical problems) and mRNA amounts (cDNA RP) with 3 replicates for all the genes. The data were normalized using a gDNA hybridization for each filter.

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: Jose Perez-Ortin

PROVIDER: E-GEOD-11521 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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There is a steady-state transcriptome in exponentially growing yeast cells.

Pelechano Vicent V Pérez-Ortín José E JE

Yeast (Chichester, England) 20100701 7

The growth of yeast cells in batches in glucose-based media is a standard condition in most yeast laboratories. Most gene expression experiments are done by taking this condition as a reference. Presumably, cells are in a stable physiological condition that can be easily reproduced in other laboratories. With this assumption, however, it is necessary to consider that the average amount of the mRNAs per cell for most genes does not change during exponential growth. That is to say, there is a stea ...[more]

PMID: 20301094

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