Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Technical Analysis of Fundulus heteroclitus cDNA Microarrays, experiment B


ABSTRACT: Analysis of the relationship between the amount of mRNA and the fluorescent signal from the microarray hybridizations. In addition, we measured expression for differences in RNA labeling and for the day on which RNA is prepared. Keywords: Gene expression Two-condition experiment, number of rounds of RNA amplification and the day on which it was prepared. Four replicates per gene per array.

ORGANISM(S): Fundulus heteroclitus

SUBMITTER: Douglas Crawford 

PROVIDER: E-GEOD-12898 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Technical analysis of cDNA microarrays.

Scott Cinda P CP   VanWye Jeff J   McDonald M Danielle MD   Crawford Douglas L DL  

PloS one 20090216 2


<h4>Background</h4>There is extensive variation in gene expression among individuals within and between populations. Accurate measures of the variation in mRNA expression using microarrays can be confounded by technical variation, which includes variation in RNA isolation procedures, day of hybridization and methods used to amplify and dye label RNA for hybridization.<h4>Methodology/principal findings</h4>In this manuscript we analyze the relationship between the amount of mRNA and the fluoresce  ...[more]

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