Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Gate-Keeping transcription through histone H3 K42, a novel site of methylation in the yeast nucleosome core


ABSTRACT: A new site of methylation was identified on histone H3 K42 in Saccharomyces cerevisiae. Mutations were engineered at this site to mimic either a constitutively modified state, K42L, or a constitutively unmodified state, K42Q in addition to an alanine substitution. K42A. The effects of these mutations on global transcription was monitored in yeast cells whose sole source of histone H3 was from a plasmid expressing these mutant proteins, and compared to that of an isogenic strain expressing the wild-type histone H3 protein from the same plasmid. Two biological replicates are included for each yeast strains expressing a specific histone H3 mutant. Three reference strains were also analyzed in the same way which expressed the wild-type histone protein. All strains were handled in the same way. A fresh culture of each strain was inoculated from a saturated overnight culture and grown to an OD A600 of approximately 0.7. Cells were harvested and total RNA extracted.

ORGANISM(S): Saccharomyces cerevisiae

SUBMITTER: Jef Boeke 

PROVIDER: E-GEOD-13889 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae.

Hyland Edel M EM   Molina Henrik H   Poorey Kunal K   Jie Chunfa C   Xie Zhi Z   Dai Junbiao J   Qian Jiang J   Bekiranov Stefan S   Auble David T DT   Pandey Akhilesh A   Boeke Jef D JD  

Genes & development 20110601 12


The DNA entry and exit points on the nucleosome core regulate the initial invasion of the nucleosome by factors requiring access to the underlying DNA. Here we describe in vivo consequences of eliminating a single protein-DNA interaction at this position through mutagenesis of histone H3 Lys 42 to alanine. This substitution has a dramatic effect on the Saccharomyces cerevisiae transcriptome in both the transcriptional output and landscape of mRNA species produced. We attribute this in part to de  ...[more]

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