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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Genetic factors that respond to N in maize leaf tissue

ABSTRACT: Genotype and nitrogen-dosage effect on maize leaves collected at V8 leaf stage B73 is a model maize genotype while Illinois high protein line (IHP) is a metabolic extreme selected for higher grain protein concentration. It is a well known fact that the leaves serve as source and earshoot as a sink. Microarray analysis of V8 leaf collected from B73 and IHP genotypes grown at vairable nitrogen applications. Keywords: Genotype and N-treatment response Technical replicates, dye swaps, technical replicates of dye swaps, no biological replicates

ORGANISM(S): Zea mays

SUBMITTER: Stephen Moose

PROVIDER: E-GEOD-18011 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Genetic factors that respond to N in maize leaf tissue

Project description:Genotype and nitrogen-dosage effect on maize leaves collected at V8 leaf stage B73 is a model maize genotype while Illinois high protein line (IHP) is a metabolic extreme selected for higher grain protein concentration. It is a well known fact that the leaves serve as source and earshoot as a sink. Microarray analysis of V8 leaf collected from B73 and IHP genotypes grown at vairable nitrogen applications. Keywords: Genotype and N-treatment response

2009-12-11 | GSE18011 | GEO

Transcriptomic analysis of maize developing earshoot, IBMRIL X IHP1 hybrid

Project description:Maize earshoot is a metabolic sink espcially related to nitrogen metabolism. Studies on the transcriptomic and metabolic changes occuring in earshoot can provide interesting answers about the nitrogen metabolic potential of the maize variety under study. Intermated B73 X Mo17 recombinant inbred lines (IBMRIL) belong to a predominantly used mapping population. Illinois high protein (IHP) line is a metabolic extreme with respect to nitrogen mebolism with around 30% seed protein. Developing earshoots from this genotype grown at nitrogen-deficient and nitrogen-sufficient conditions were sampled, processed and analyzed through microarray technology. IBMRIL population was crossed to IHP to find the allelic interaction related to nitrogen metabolism. Microarray experiment was conducted using the developing earshoots from IBMRIL X IHP1 lines that deffered in their grain yield significantly. Keywords: Yield response Technical replicates, dye swaps, technical replicates of dye swaps, no biological replicates

2010-02-03 | E-GEOD-17953 | biostudies-arrayexpress

Genotype changes in 8DAP leaf

Project description:Genotype dependent gene expression changes in the leaves of Illinois protein lines at 8 days after pollination (DAP). Illinois protein lines (IPL) comprise lines known as Illinois high protein (IHP), Illinois low protein (ILP), Illinois reverse-low protein (IRLP) and Illinois reverse-high protein (IRHP) lines. These lines represent over a century old experiment containing lines that represent various levels of nitrogen metabolism potential as a function of their grain protein concentration. Microarray experiment was conducted using 8 DAP leaves from the above mentioned four IPLs. Keywords: Genotype response Technical replicates, dye swaps, technical replicates of dye swaps, no biological replicates

2010-05-18 | E-GEOD-17971 | biostudies-arrayexpress

Transcriptome analysis of 16 DAP seeds of Illinois protein lines.

Project description:Illinois protein lines (IPL) comprise lines known as Illinois high protein (IHP), Illinois low protein (ILP), Illinois reverse-low protein (IRLP) and Illinois reverse-high protein (IRHP) lines. These lines represent over a century old experiment containing lines that represent various levels of nitrogen metabolism potential as a function of their grain protein concentration. Microarray experiment was conducted using 16 DAP seeds from the above mentioned four IPLs. Keywords: Genotype response Technical replicates, dye swaps, technical replicates of dye swaps, no biological replicates

2010-01-13 | E-GEOD-18006 | biostudies-arrayexpress

Transcriptomic analysis of maize developing earshoot, B73 X Mo17 hybrid

2010-01-13 | E-GEOD-17932 | biostudies-arrayexpress

Transcriptomic analysis of maize developing earshoot from tropical maize hybrid genotypes native to Nigeria

Project description:Tropical maize genotypes are well known for their traits of late flowering and higher biomass. Carbon/Nitrogen balance in these genotypes is significantly different from temperate genotypes. Microarray analysis of gene expression changes occuring in developing earshoots was done and results were compared with the temperate genotype microarray analysis, previously conducted. A low yielding variety was used as a reference against three high yielding varities. Keywords: Genotype response Technical replicates, dye swaps, technical replicates of dye swaps, no biological replicates

2010-05-18 | E-GEOD-18008 | biostudies-arrayexpress

Transcriptomic analysis of maize developing earshoot, IBMRIL X IHP1 hybrid

2010-02-04 | GSE17953 | GEO

Maize leaf development, bundle sheath

Project description:Band9 maize B73 leaf, Bundle sheath strand section1(0-1.5cm) biological replica1 SDS-PAGE trypsin Orbitrap

2011-04-15 | PRD000190 | Pride

S frugiperda response to BX3 and BX1 maize mutant

Project description:S. frugiperda fed with bx3 maize mutant and its control genotype B73 AND fed with bx1 maize mutant and its control genotype H88. The bx1 mutant is derived from the insertion of a Mu element within the Bx1 gene in a H88 genetic background (Hamilton 1964). Similarly, the bx3 mutant was obtained in the genotype B73 by insertion of a Mu element in the Bx3 gene (Frey, Chomet et al. 1997).

2019-03-01 | GSE40264 | GEO

Gene expression variation among eight maize inbreds - 70mer oligo array

Project description:Expression profiling analyses for eight maize inbreds reveals extensive transcriptional variation. This is a companion dataset to an Affymetrix profiling experiment (GEO Series GSE10237). Keywords: Genotype comparison series Expression profiling was used to study gene expression in aerial tissue from 11-day seedlings of maize. Three biological replicates were performed for eight different inbred lines; B37, B73, B84, Mo17, Oh43, B14a, Wf9 and W22.

2008-02-22 | E-GEOD-10543 | biostudies-arrayexpress

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