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ModENCODE RNA-Seq of Drosophila Cl.8 small RNAs

ABSTRACT: Deep Sequencing of Cl.8 small RNAs. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Seq of small RNAs from D. melanogaster Cl.8

ORGANISM(S): Drosophila melanogaster

SUBMITTER: Chris Zaleski

PROVIDER: E-GEOD-18034 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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modENCODE RNA-Seq of Drosophila Cl.8 small RNAs

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2009-09-10 | GSE18034 | GEO

modENCODE RNA-Seq of Drosophila BG3 small RNAs

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modENCODE RNA-Seq of Drosophila Kc167 small RNAs

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modENCODE RNA-Seq of Drosophila S2-DRSC small RNAs

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Dm_CME-W1-Cl.8p_TotalRNA_p200_060-062-064_38bp

Project description:modENCODE_submission_49 This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Keywords: Transcript tiling array analysis EXPERIMENT TYPE: Transcript tiling array analysis BIOLOGICAL SOURCE: Cell Line: CME-W1-Cl.8+ TISSUE: dorsal mesothoracic disc SEX: Male NUMBER OF REPLICATES: 3; Replicate 1 applied to 1 array(s), Replicate 2 applied to 1 array(s), Replicate 3 applied to 1 array(s), No dye swap. EXPERIMENTAL FACTORS: Cell Line CME-W1-Cl.8+

2010-04-09 | E-GEOD-16271 | biostudies-arrayexpress

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High-throughput sequencing of Drosophila melanogaster small RNAs from S2R+ cells

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2008-12-04 | E-GEOD-13679 | biostudies-arrayexpress

Lai_CMEW1_Cl_8

Project description:modENCODE_submission_2721 This submission comes from a modENCODE project of Eric Lai. For full list of modENCODE projects, see http://www.genome.gov/26524648 Project Goal: We plan to generate a comprehensive catalog of expressed and functional microRNAs, and generate biological evidence for their regulatory activity. We plan also to delineate the primary transcription units of microRNA genes. Finally, we plan to annotate other classes of non-miRNA expressed small RNAs, as least some of which may define novel classes of small RNA genes. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Keywords: RNA-seq EXPERIMENT TYPE: RNA-seq. BIOLOGICAL SOURCE: Cell Line: CME-W1-Cl.8+; Tissue: dorsal mesothoracic disc; Developmental Stage: third instar larval stage; Sex: Male; EXPERIMENTAL FACTORS: Cell Line CME-W1-Cl.8+

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