Unknown,Transcriptomics,Genomics,Proteomics

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Definitive SNP/CNV haplotype map of Asians determined using a collection of complete hydatidiform moles


ABSTRACT: This SuperSeries is composed of the following subset Series: GSE18642: Definitive SNP/CNV haplotype map of Asians determined using a collection of complete hydatidiform moles (Affymetrix) GSE18663: Definitive SNP/CNV haplotype map of Asians determined using a collection of complete hydatidiform moles (Illumina) Refer to individual Series

ORGANISM(S): Homo sapiens

SUBMITTER: Kenshi Hayashi 

PROVIDER: E-GEOD-18701 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

A definitive haplotype map as determined by genotyping duplicated haploid genomes finds a predominant haplotype preference at copy-number variation events.

Kukita Yoji Y   Yahara Koji K   Tahira Tomoko T   Higasa Koichiro K   Sonoda Miki M   Yamamoto Ken K   Kato Kiyoko K   Wake Norio N   Hayashi Kenshi K  

American journal of human genetics 20100527 6


The majority of complete hydatidiform moles (CHMs) harbor duplicated haploid genomes that originate from sperm. This makes CHMs more advantageous than conventional diploid cells for determining haplotypes of SNPs and copy-number variations (CNVs), because all of the genetic variants in a CHM genome are homozygous. Here we report SNP and CNV haplotype structures determined by analysis of 100 CHMs from Japanese subjects via high-density DNA arrays. The obtained haplotype map should be useful as a  ...[more]

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